2KIB | pdb_00002kib

Protein Fibril

• PDB DOI: https://doi.org/10.2210/pdb2KIB/pdb
• BMRB: 20074

• Classification: PROTEIN FIBRIL
• Mutation(s): No 


• Deposited: 2009-05-01 Released: 2009-09-08 
• Deposition Author(s): Nielsen, J.T., Bjerring, M., Jeppesen, M.D., Pedersen, R.O., Pedersen, J.M., Hein, K.L., Vosegaard, T., Skrydstrup, T., Otzen, D.E., Nielsen, N.

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Experimental Data Snapshot

• Method: SOLID-STATE NMR
• Conformers Calculated: 1000 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Literature

Unique identification of supramolecular structures in amyloid fibrils by solid-state NMR spectroscopy.

Nielsen, J.T., Bjerring, M., Jeppesen, M.D., Pedersen, R.O., Pedersen, J.M., Hein, K.L., Vosegaard, T., Skrydstrup, T., Otzen, D.E., Nielsen, N.C.

(2009) Angew Chem Int Ed Engl 48: 2118-2121

• PubMed: 19130518 
• DOI: https://doi.org/10.1002/anie.200804198
• Primary Citation Related Structures: 
  2KIB


• PubMed Abstract: 
  

  The fibril structure formed by the amyloidogenic fragment SNNFGAILSS of the human islet amyloid polypeptide (hIAPP) is determined with 0.52 A resolution. Symmetry information contained in the easily obtainable resonance assignments from solid-state NMR spectra (see picture), along with long-range constraints, can be applied to uniquely identify the supramolecular organization of fibrils.

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Organizational Affiliation: 
• Center for Insoluble Protein Structures (inSPIN), Interdisciplinary Nanoscience Center (iNANO), University of Aarhus, 8000 Aarhus C, Denmark.

Biological Assembly 1  

Global Symmetry: Dihedral - D4  (Explore in 3D)
Global Stoichiometry: Homo 8-mer - A8 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 5.77 kDa 
• Atom Count: 408 
• Modeled Residue Count: 56 
• Deposited Residue Count: 56 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NFGAIL segment from human islet amyloid polypeptide	A, B, C, D, E, F, G, H	7	N/A	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: SOLID-STATE NMR
• Conformers Calculated: 1000 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-09-08 
Deposition Author(s): Nielsen, J.T., Bjerring, M., Jeppesen, M.D., Pedersen, R.O., Pedersen, J.M., Hein, K.L., Vosegaard, T., Skrydstrup, T., Otzen, D.E., Nielsen, N.

Revision History  

• Version 1.0: 2009-09-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2020-02-26
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.3: 2024-05-01
  Changes: Data collection, Database references