2KGO | pdb_00002kgo

Solution NMR structure of Zn finger protein YBIL from Escherichia coli. NESG target ET107, OCSP target EC0402

PDB DOI: https://doi.org/10.2210/pdb2KGO/pdb
BMRB: 16214

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-03-13 Released: 2009-03-31
Deposition Author(s): Gutmanas, A., Yee, A., Lemak, A., Fares, C., Guido, V., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Zn-finger protein YBIL from E. coli

Gutmanas, A., Yee, A., Lemak, A., Fares, C., Arrowsmith, C.H.

To be published.

Macromolecule Content

Total Structure Weight: 12.01 kDa
Atom Count: 682
Modeled Residue Count: 88
Deposited Residue Count: 108
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein ybiI	A	108	Escherichia coli K-12	Mutation(s): 0 Gene Names: b0803, JW0788, ybiI, ybil
UniProt
Find proteins for P41039 (Escherichia coli (strain K12)) Explore P41039 Go to UniProtKB: P41039
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P41039
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-03-31

Deposition Author(s):

Arrowsmith, C.H.

Northeast Structural Genomics Consortium (NESG)

Ontario Centre for Structural Proteomics (OCSP)

Revision History (Full details and data files)

Version 1.0: 2009-03-31
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2020-02-26
Changes: Data collection, Database references, Other
Version 1.3: 2023-06-14
Changes: Database references, Derived calculations, Other
Version 1.4: 2024-05-08
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.