2KD3 | pdb_00002kd3

NMR structure of the Wnt modulator protein Sclerostin


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

NMR structure of the Wnt modulator protein Sclerostin

Weidauer, S.E.Schmieder, P.Beerbaum, M.Schmitz, W.Oschkinat, H.Mueller, T.D.

(2009) Biochem Biophys Res Commun 380: 160-165

  • DOI: https://doi.org/10.1016/j.bbrc.2009.01.062
  • Primary Citation Related Structures: 
    2KD3

  • PubMed Abstract: 

    Sclerostin has been identified as a negative regulator of bone growth. Initially it was considered that Sclerostin performs its regulatory function via acting as a modulator of bone morphogenetic proteins (BMPs) similar to known examples such as Noggin, Chordin, and members of the DAN family. Recent findings, however, show that Sclerostin interferes with the Wnt signaling pathway due to binding to the Wnt co-receptor LRP5 thereby modulating bone growth. As Sclerostin is exclusively produced by osteocytes located in bones, neutralization of its bone-inhibiting functions makes it a highly interesting target for an osteoanabolic therapeutic approach in diseases characterized by bone loss, such as osteoporosis. Despite the huge interest in Sclerostin inhibitors the molecular basis of its function and its interaction with components of the Wnt signaling cascade has remained unclear. Here, we present the NMR structure of murine Sclerostin providing the first insights how Sclerostin might bind to LRP5.


  • Organizational Affiliation
    • Lehrstuhl für Botanik I-Molekulare Pflanzenphysiologie und Biophysik, Julius-von-Sachs Institut für Biowissenschaften (Biozentrum) der Universität Würzburg, Julius-von-Sachs Platz 2, D-97082 Würzburg, Germany.

Macromolecule Content 

  • Total Structure Weight: 12.71 kDa 
  • Atom Count: 767 
  • Modeled Residue Count: 97 
  • Deposited Residue Count: 113 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Sclerostin113Mus musculusMutation(s): 0 
UniProt
Find proteins for Q99P68 (Mus musculus)
Explore Q99P68 
Go to UniProtKB:  Q99P68
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99P68
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-02-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-03-16
    Changes: Data collection, Database references, Derived calculations
  • Version 1.3: 2024-10-30
    Changes: Data collection, Structure summary