2K17 | pdb_00002k17

Solution structure of the TAF3 PHD domain in complex with a H3K4me3 peptide

• PDB DOI: https://doi.org/10.2210/pdb2K17/pdb
• BMRB: 15671

• Classification: TRANSCRIPTION
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-02-22 Released: 2008-07-15 
• Deposition Author(s): van Ingen, H., van Schaik, F.M.A., Wienk, H., Timmers, M., Boelens, R.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Recognition of the H3K4me3 mark by the TAF3-PHD finger

van Ingen, H., van Schaik, F.M.A., Wienk, H., Ballering, J., Deschesne, A., Kruijzer, J., Timmers, H., Boelens, R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 10.15 kDa 
• Atom Count: 697 
• Modeled Residue Count: 88 
• Deposited Residue Count: 88 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
H3K4me3 peptide	A [auth P]	13	N/A	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription initiation factor TFIID subunit 3	B [auth A]	75	Mus musculus	Mutation(s): 0  Gene Names: Taf3
UniProt
Find proteins for Q5HZG4 (Mus musculus) Explore Q5HZG4  Go to UniProtKB:  Q5HZG4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	C [auth A], D [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
M3L	A [auth P]	L-PEPTIDE LINKING	C9 H21 N2 O2		LYS

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-07-15 
Deposition Author(s): van Ingen, H., van Schaik, F.M.A., Wienk, H., Timmers, M., Boelens, R.

Revision History  

• Version 1.0: 2008-07-15
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2020-02-19
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.3: 2023-06-14
  Changes: Database references, Derived calculations, Other