2JT9 | pdb_00002jt9

NMR structure of immunosuppressory peptide containing cyclolinopeptide X and antennapedia(43-58) sequences

PDB DOI: https://doi.org/10.2210/pdb2JT9/pdb

Classification: IMMUNE SYSTEM
Mutation(s): No

Deposited: 2007-07-21 Released: 2008-07-29
Deposition Author(s): Jaremko, L., Jaremko, M., Zhukov, I., Cebrat, M.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 19
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2JT9

This is version 2.0 of the entry. See complete history.

Literature

NMR structure of immunosuppressory peptide containing cyclolinopeptide X and antennapedia(43-58) sequences

Jaremko, L., Jaremko, M., Zhukov, I., Cebrat, M., Szewczuk, Z.

To be published.

Macromolecule Content

Total Structure Weight: 3.04 kDa
Atom Count: 213
Modeled Residue Count: 22
Deposited Residue Count: 22
Unique protein chains: 2

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
5-mer immunosuppressory peptide from cyclolinopeptide X	A	5	N/A	Mutation(s): 0

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Modified 16-mer immunosuppressory peptide from Homeotic protein antennapedia	B	17	N/A	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACA Query on ACA Download:Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A] mmCIF format, chain D [auth A]	D [auth A]	6-AMINOHEXANOIC ACID C₆ H₁₃ N O₂ SLXKOJJOQWFEFD-UHFFFAOYSA-N		Interactions Focus chain D [auth A]
ABU Query on ABU Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	GAMMA-AMINO-BUTANOIC ACID C₄ H₉ N O₂ BTCSSZJGUNDROE-UHFFFAOYSA-N		Interactions Focus chain C [auth A]

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
NAL Query on NAL	B	L-PEPTIDE LINKING	C₁₃ H₁₃ N O₂		ALA
NLE Query on NLE	B	L-PEPTIDE LINKING	C₆ H₁₃ N O₂		LEU

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 19
Selection Criteria: structures with the lowest energy

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-07-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-07-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2011-08-03
Changes: Atomic model
Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.