2I81 | pdb_00002i81

Crystal Structure of Plasmodium vivax 2-Cys Peroxiredoxin, Reduced

PDB DOI: https://doi.org/10.2210/pdb2I81/pdb

Classification: OXIDOREDUCTASE
Organism(s): Plasmodium vivax Sal-1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-08-31 Released: 2006-09-19
Deposition Author(s): Artz, J.D., Qiu, W., Dong, A., Lew, J., Ren, H., Zhao, Y., Kozieradski, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.265 (Depositor), 0.261 (DCC)
R-Value Work:
0.217 (Depositor), 0.232 (DCC)
R-Value Observed:
0.220 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of Plasmodium vivax 2-Cys Peroxiredoxin, Reduced

Artz, J.D., Qiu, W., Dong, A., Lew, J., Ren, H., Zhao, Y., Kozieradski, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R.

To be published.

Macromolecule Content

Total Structure Weight: 118.66 kDa
Atom Count: 7,270
Modeled Residue Count: 909
Deposited Residue Count: 1,065
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2-Cys Peroxiredoxin	A, B, C, D, E	213	Plasmodium vivax Sal-1	Mutation(s): 0
UniProt
Find proteins for A5K421 (Plasmodium vivax (strain Salvador I)) Explore A5K421 Go to UniProtKB: A5K421
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A5K421
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.265 (Depositor), 0.261 (DCC)
R-Value Work: 0.217 (Depositor), 0.232 (DCC)
R-Value Observed: 0.220 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.352	α = 90
b = 212.575	β = 90
c = 115.261	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-09-19

Deposition Author(s):

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2006-09-19
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description