2HQR | pdb_00002hqr

Structure of a Atypical Orphan Response Regulator Protein Revealed a New Phosphorylation-Independent Regulatory Mechanism


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 2HQR

This is version 1.3 of the entry. See complete history

Literature

Structure of an Atypical Orphan Response Regulator Protein Supports a New Phosphorylation-independent Regulatory Mechanism

Hong, E.Lee, H.M.Ko, H.Kim, D.-U.Jeon, B.-Y.Jung, J.Shin, J.Lee, S.-A.Kim, Y.Jeon, Y.H.Cheong, C.Cho, H.-S.Lee, W.

(2007) J Biological Chem 282: 20667-20675

  • DOI: https://doi.org/10.1074/jbc.M609104200
  • Primary Citation Related Structures: 
    2HQN, 2HQO, 2HQR

  • PubMed Abstract: 

    Two-component signal transduction systems, commonly found in prokaryotes, typically regulate cellular functions in response to environmental conditions through a phosphorylation-dependent process. A new type of response regulator, hp1043 (HP-RR) from Helicobacter pylori, has been recently identified. HP-RR is essential for cell growth and does not require the well known phosphorelay scheme. Unphosphorylated HP-RR binds specifically to its own promoter (P(1043)) and autoregulates the promoter of the tlpB gene (P(tlpB)). We have determined the structure of HP-RR by NMR and x-ray crystallography, revealing a symmetrical dimer with two functional domains. The molecular topology resembles that of the OmpR/PhoB subfamily, however, the symmetrical dimer is stable even in the unphosphorylated state. The dimer interface, formed by three secondary structure elements (alpha4-beta5-alpha5), resembles that of the active, phosphorylated forms of ArcA and PhoB. Several conserved residues of the HP-RR dimeric interface deviate from the OmpR/PhoB subfamily, although there are similar salt bridges and hydrophobic patches within the interface. Our findings reveal how a new type of response regulator protein could function as a cell growth-associated regulator in the absence of post-translational modification.


  • Organizational Affiliation
    • Department of Biochemistry and HTSD-NMR & Application NRL, College of Science, Yonsei University, 134 Shinchon-Dong, Seodaemoon-Gu, Seoul 120-749, Korea.

Macromolecule Content 

  • Total Structure Weight: 50.95 kDa 
  • Atom Count: 3,574 
  • Modeled Residue Count: 446 
  • Deposited Residue Count: 446 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative TRANSCRIPTIONAL REGULATOR
A, B
223Helicobacter pylori J99Mutation(s): 0 
UniProt
Find proteins for Q9ZM42 (Helicobacter pylori (strain J99 / ATCC 700824))
Explore Q9ZM42 
Go to UniProtKB:  Q9ZM42
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9ZM42
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-05-08
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.3: 2024-05-01
    Changes: Data collection, Database references