Crystal structure of human RAB5B in complex with GDP
Hong, B., Shen, L., Wang, J., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ras-related protein Rab-5B | 179 | Homo sapiens | Mutation(s): 0  Gene Names: RAB5B | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61020 (Homo sapiens) Explore P61020  Go to UniProtKB:  P61020 | |||||
PHAROS:  P61020 GTEx:  ENSG00000111540  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61020 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GDP Query on GDP | C [auth A], E [auth B] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N | |||
D1D Query on D1D | D [auth A], F [auth B] | (4S,5S)-1,2-DITHIANE-4,5-DIOL C4 H8 O2 S2 YPGMOWHXEQDBBV-QWWZWVQMSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 41.302 | α = 90 |
b = 78.37 | β = 90 |
c = 95.501 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
ARP/wARP | model building |
MolProbity | model building |