2H17 | pdb_00002h17

Structure of human ADP-ribosylation factor-like 5 (ARL5)

• PDB DOI: https://doi.org/10.2210/pdb2H17/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2006-05-16 Released: 2006-06-13 
• Deposition Author(s): Rabeh, W.M., Tempel, W., Yaniw, D., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.227 (Depositor), 0.234 (DCC) 
• R-Value Work: 
  0.186 (Depositor), 0.193 (DCC) 

Starting Model: experimental

Literature

Structure of human ADP-ribosylation factor-like 5 (ARL5)

Rabeh, W.M., Tempel, W., Yaniw, D., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 21.04 kDa 
• Atom Count: 1,409 
• Modeled Residue Count: 160 
• Deposited Residue Count: 181 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ADP-ribosylation factor-like protein 5A	A	181	Homo sapiens	Mutation(s): 0  Gene Names: ARL5A, ARFLP5, ARL5
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y689 (Homo sapiens) Explore Q9Y689  Go to UniProtKB:  Q9Y689
PHAROS:  Q9Y689 GTEx:  ENSG00000162980

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GDP	B [auth A]	GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N
UNX	C [auth A], D [auth A], E [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.227 (Depositor), 0.234 (DCC) 
• R-Value Work:  0.186 (Depositor), 0.193 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.047	α = 90
b = 48.772	β = 90
c = 85.711	γ = 90

Software Package:

Software Name	Purpose
PHASER	phasing
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
ARP/wARP	model building
MolProbity	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-06-13 
Deposition Author(s): Rabeh, W.M., Tempel, W., Yaniw, D., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2006-06-13
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description, Structure summary
• Version 1.4: 2023-08-30
  Changes: Data collection, Database references, Derived calculations, Refinement description