2FX5 | pdb_00002fx5

Pseudomonas mendocina lipase

• PDB DOI: https://doi.org/10.2210/pdb2FX5/pdb

• Classification: HYDROLASE
• Organism(s): Ectopseudomonas mendocina
• Expression System: Bacillus subtilis
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2006-02-03 Released: 2006-08-01 
• Deposition Author(s): Bott, R., Wu, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 27.78 kDa 
• Atom Count: 2,061 
• Modeled Residue Count: 258 
• Deposited Residue Count: 258 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
lipase	A	258	Ectopseudomonas mendocina	Mutation(s): 0  EC: 3.1.1.3 Membrane Entity: Yes
UniProt
Find proteins for A4Y035 (Ectopseudomonas mendocina (strain ymp)) Explore A4Y035  Go to UniProtKB:  A4Y035

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TLA	B [auth A]	L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.5	α = 90
b = 58.5	β = 90
c = 145	γ = 90

Software Package:

Software Name	Purpose
PROTEIN	model building
PROLSQ	refinement
PROTEIN	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-08-01 
Deposition Author(s): Bott, R., Wu, S.

Revision History  

• Version 1.0: 2006-08-01
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description
• Version 1.4: 2025-03-26
  Changes: Data collection, Database references, Derived calculations, Structure summary