2F7L | pdb_00002f7l

Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase

PDB DOI: https://doi.org/10.2210/pdb2F7L/pdb

Classification: ISOMERASE
Organism(s): Sulfurisphaera tokodaii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2005-12-01 Released: 2006-12-05
Deposition Author(s): Kawamura, T., Sakai, N., Akutsu, J., Zhang, Z., Watanabe, N., Kawarabayashi, Y., Tanaka, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.280 (Depositor), 0.279 (DCC)
R-Value Work:
0.225 (Depositor), 0.228 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2F7L

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase

Kawamura, T., Sakai, N., Akutsu, J., Zhang, Z., Watanabe, N., Kawarabayashi, Y., Tanaka, I.

To be published.

Macromolecule Content

Total Structure Weight: 100.43 kDa
Atom Count: 7,113
Modeled Residue Count: 910
Deposited Residue Count: 910
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
455aa long hypothetical phospho-sugar mutase	A, B	455	Sulfurisphaera tokodaii	Mutation(s): 0 Gene Names: ST0242 EC: 5.4.2.8 (PDB Primary Data), 5.4.2.2 (PDB Primary Data), 5.4.2.13 (UniProt), 5.4.2.10 (UniProt)
UniProt
Find proteins for Q976E4 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q976E4 Go to UniProtKB: Q976E4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q976E4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.280 (Depositor), 0.279 (DCC)
R-Value Work: 0.225 (Depositor), 0.228 (DCC)

Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 161.904	α = 90
b = 161.904	β = 90
c = 170.494	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
CNS	refinement

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2006-12-05

Deposition Author(s):

Kawarabayashi, Y.

Revision History (Full details and data files)

Version 1.0: 2006-12-05
Type: Initial release
Version 1.1: 2008-04-25
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.