2EJ5 | pdb_00002ej5

Crystal structure of GK2038 protein (enoyl-CoA hydratase subunit II) from Geobacillus kaustophilus

PDB DOI: https://doi.org/10.2210/pdb2EJ5/pdb

Classification: LYASE
Organism(s): Geobacillus kaustophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-03-15 Released: 2007-09-18
Deposition Author(s): Okazaki, N., Agari, Y., Ebihara, A., Chen, L., Fu, Z.Q., Chrzas, J., Wang, B.C., Kuramitsu, S., Yamamoto, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.242 (Depositor), 0.240 (DCC)
R-Value Work:
0.192 (Depositor), 0.193 (DCC)
R-Value Observed:
0.194 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2EJ5

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of GK2038 protein (enoyl-CoA hydratase subunit II) from Geobacillus kaustophilus

Okazaki, N., Agari, Y., Ebihara, A., Chen, L., Fu, Z.Q., Chrzas, J., Wang, B.C., Kuramitsu, S., Yamamoto, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 56.42 kDa
Atom Count: 4,335
Modeled Residue Count: 501
Deposited Residue Count: 514
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase subunit II	A, B	257	Geobacillus kaustophilus	Mutation(s): 0 Gene Names: GK2038
UniProt
Find proteins for Q5KYB3 (Geobacillus kaustophilus (strain HTA426)) Explore Q5KYB3 Go to UniProtKB: Q5KYB3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5KYB3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.242 (Depositor), 0.240 (DCC)
R-Value Work: 0.192 (Depositor), 0.193 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 117.008	α = 90
b = 117.008	β = 90
c = 117.008	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-09-18

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-09-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.2: 2024-03-13
Changes: Data collection, Database references