2E12 | pdb_00002e12

The crystal structure of XC5848 from Xanthomonas campestris adopting a novel variant of Sm-like motif

PDB DOI: https://doi.org/10.2210/pdb2E12/pdb

Classification: TRANSLATION
Organism(s): Xanthomonas campestris pv. campestris
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-10-17 Released: 2007-10-30
Deposition Author(s): Chin, K.-H., Ruan, S.-K., Wang, A.H.-J., Chou, S.-H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.280 (Depositor)
R-Value Work:
0.220 (Depositor)
R-Value Observed:
0.240 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2E12

This is version 1.3 of the entry. See complete history.

Literature

XC5848, an ORFan protein from Xanthomonas campestris, adopts a novel variant of Sm-like motif

Chin, K.-H., Ruan, S.-K., Wang, A.H.-J., Chou, S.-H.

(2007) Proteins 68: 1006-1010

PubMed: 17546661 Search on PubMed
DOI: https://doi.org/10.1002/prot.21375
Primary Citation Related Structures:
2E12

Organizational Affiliation

Institute of Biochemistry, National Chung-Hsing University, Taichung, 40227, Taiwan, Republic of China.

Macromolecule Content

Total Structure Weight: 23.14 kDa
Atom Count: 1,634
Modeled Residue Count: 186
Deposited Residue Count: 202
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein XCC3642	A, B	101	Xanthomonas campestris pv. campestris	Mutation(s): 0
UniProt
Find proteins for Q8P4R5 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8P4R5 Go to UniProtKB: Q8P4R5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8P4R5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.280 (Depositor)
R-Value Work: 0.220 (Depositor)
R-Value Observed: 0.240 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.942	α = 90
b = 51.699	β = 90
c = 82.12	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
AMoRE	phasing
CNS	refinement
DENZO	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-10-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-10-30
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2019-11-06
Changes: Data collection
Version 1.3: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.