2DZJ | pdb_00002dzj

2DZJ/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Synaptic Glycoprotein SC2

PDB DOI: https://doi.org/10.2210/pdb2DZJ/pdb
BMRB: 11280

Classification: SUGAR BINDING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2006-09-29 Released: 2007-03-29
Deposition Author(s): Zhao, C., Yoneyama, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2DZJ

This is version 1.4 of the entry. See complete history.

Literature

2DZJ/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Synaptic Glycoprotein SC2

Zhao, C., Yoneyama, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 10.01 kDa
Atom Count: 703
Modeled Residue Count: 88
Deposited Residue Count: 88
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Synaptic glycoprotein SC2	A	88	Homo sapiens	Mutation(s): 0 Gene Names: GPSN2 EC: 1.3.1.93
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZ01 (Homo sapiens) Explore Q9NZ01 Go to UniProtKB: Q9NZ01
PHAROS: Q9NZ01 GTEx: ENSG00000099797
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9NZ01
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,target function

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-03-29

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-03-29
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.