2DUK | pdb_00002duk

Crystal structure of MS0616

• PDB DOI: https://doi.org/10.2210/pdb2DUK/pdb

• Classification: HYDROLASE
• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 2006-07-24 Released: 2007-01-24 
• Deposition Author(s): Hosaka, T., Nishino, A., Uchikubo, K.-T., Kishishita, S., Murayama, K., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.62 Å
• R-Value Free: 
  0.287 (Depositor), 0.242 (DCC) 
• R-Value Work: 
  0.247 (Depositor), 0.237 (DCC) 
• R-Value Observed: 
  0.249 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of MS0616

Hosaka, T., Nishino, A., Uchikubo, K.-T., Kishishita, S., Murayama, K., Shirouzu, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 31.94 kDa 
• Atom Count: 2,261 
• Modeled Residue Count: 270 
• Deposited Residue Count: 276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MS0616	A, B	138	Mus musculus	Mutation(s): 0  EC: 3.6.1.52 (PDB Primary Data), 3.6.1 (PDB Primary Data), 3.6.1.61 (UniProt)
UniProt
Find proteins for Q8R2U6 (Mus musculus) Explore Q8R2U6  Go to UniProtKB:  Q8R2U6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.62 Å
• R-Value Free:  0.287 (Depositor), 0.242 (DCC) 
• R-Value Work:  0.247 (Depositor), 0.237 (DCC) 
• R-Value Observed: 0.249 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.891	α = 90
b = 41.448	β = 90
c = 189.288	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-01-24 
Deposition Author(s): Hosaka, T., Nishino, A., Uchikubo, K.-T., Kishishita, S., Murayama, K., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-01-24
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Refinement description
• Version 1.4: 2024-11-06
  Changes: Structure summary