2DK4 | pdb_00002dk4

Solution structure of Splicing Factor Motif in Pre-mRNA splicing factor 18 (hPRP18)

PDB DOI: https://doi.org/10.2210/pdb2DK4/pdb
BMRB: 11355

Classification: GENE REGULATION
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2006-04-06 Released: 2006-10-06
Deposition Author(s): He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function,structures with the lowest energy,structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 2DK4

This is version 1.5 of the entry. See complete history.

Literature

Solution structure of the splicing factor motif of the human Prp18 protein.

He, F., Inoue, M., Kigawa, T., Takahashi, M., Kuwasako, K., Tsuda, K., Kobayashi, N., Terada, T., Shirouzu, M., Guntert, P., Yokoyama, S., Muto, Y.

(2012) Proteins 80: 968-974

PubMed: 22213562 Search on PubMed
DOI: https://doi.org/10.1002/prot.24003
Primary Citation Related Structures:
2DK4

Organizational Affiliation

RIKEN Systems and Structural Biology Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan.

Macromolecule Content

Total Structure Weight: 8.39 kDa
Atom Count: 587
Modeled Residue Count: 76
Deposited Residue Count: 76
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pre-mRNA-splicing factor 18	A	76	Homo sapiens	Mutation(s): 0 Gene Names: PRPF18, HPRP18
UniProt & NIH Common Fund Data Resources
Find proteins for Q99633 (Homo sapiens) Explore Q99633 Go to UniProtKB: Q99633
PHAROS: Q99633 GTEx: ENSG00000165630
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q99633
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function,structures with the lowest energy,structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-10-06

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-10-06
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2011-12-21
Changes: Database references
Version 1.4: 2019-12-25
Changes: Data collection, Database references
Version 1.5: 2024-05-01
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.