2DDI | pdb_00002ddi

NMR structure of the second Kunitz domain of human WFIKKN1

PDB DOI: https://doi.org/10.2210/pdb2DDI/pdb
BMRB: 6963

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Komagataella pastoris
Mutation(s): No

Deposited: 2006-01-30 Released: 2006-12-19
Deposition Author(s): Liepinsh, E., Otting, G.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 2DDI

This is version 1.4 of the entry. See complete history.

Literature

Second Kunitz-type protease inhibitor domain of the human WFIKKN1 protein

Liepinsh, E., Nagy, A., Trexler, M., Patthy, L., Otting, G.

(2006) J Biomol NMR 35: 73-78

PubMed: 16791741 Search on PubMed
DOI: https://doi.org/10.1007/s10858-006-9013-1
Primary Citation Related Structures:
2DDI, 2DDJ

Organizational Affiliation

Department of Medical Biochemistry and Biophysics, Karolinska Institute, S-17177, Stockholm, Sweden.

Macromolecule Content

Total Structure Weight: 7.88 kDa
Atom Count: 553
Modeled Residue Count: 70
Deposited Residue Count: 70
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	A	70	Homo sapiens	Mutation(s): 0 Gene Names: WFIKKN1
UniProt & NIH Common Fund Data Resources
Find proteins for Q96NZ8 (Homo sapiens) Explore Q96NZ8 Go to UniProtKB: Q96NZ8
PHAROS: Q96NZ8 GTEx: ENSG00000127578
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q96NZ8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2006-12-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-12-19
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-10-16
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.