2D96 | pdb_00002d96

Solution structure of the Death domain of Nuclear factor NF-kappa-B p100

PDB DOI: https://doi.org/10.2210/pdb2D96/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2005-12-08 Released: 2006-12-08
Deposition Author(s): Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2D96

This is version 1.4 of the entry. See complete history.

Literature

Solution structure of the Death domain of Nuclear factor NF-kappa-B p100

Nagashima, T., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 11.22 kDa
Atom Count: 786
Modeled Residue Count: 109
Deposited Residue Count: 109
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear factor NF-kappa-B p100 subunit	A	109	Homo sapiens	Mutation(s): 0 Gene Names: NFKB2
UniProt & NIH Common Fund Data Resources
Find proteins for Q00653 (Homo sapiens) Explore Q00653 Go to UniProtKB: Q00653
PHAROS: Q00653 GTEx: ENSG00000077150
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q00653
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-12-08

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-12-08
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.