2D7L | pdb_00002d7l

Solution structure of the HMG box domain from human WD repeat and HMG-box DNA binding protein 1

PDB DOI: https://doi.org/10.2210/pdb2D7L/pdb
BMRB: 11134

Classification: GENE REGULATION, DNA BINDING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2005-11-24 Released: 2006-05-24
Deposition Author(s): Tomizawa, T., Kigawa, T., Saito, K., Koshiba, S., Inoue, M., Kamatari, Y.O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Solution structure of the HMG box domain from human WD repeat and HMG-box DNA binding protein 1

Tomizawa, T., Kigawa, T., Saito, K., Koshiba, S., Inoue, M., Kamatari, Y.O., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 8.88 kDa
Atom Count: 621
Modeled Residue Count: 81
Deposited Residue Count: 81
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
WD repeat and HMG-box DNA binding protein 1	A	81	Homo sapiens	Mutation(s): 0 Gene Names: WDHD1
UniProt & NIH Common Fund Data Resources
Find proteins for O75717 (Homo sapiens) Explore O75717 Go to UniProtKB: O75717
PHAROS: O75717 GTEx: ENSG00000198554
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O75717
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-05-24

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-05-24
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.