2D2Q | pdb_00002d2q

Crystal structure of the dimerized radixin FERM domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 
    0.269 (Depositor), 0.266 (DCC) 
  • R-Value Work: 
    0.222 (Depositor), 0.221 (DCC) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2D2Q

This is version 1.3 of the entry. See complete history

Literature

Structure of dimerized radixin FERM domain suggests a novel masking motif in C-terminal residues 295-304

Kitano, K.Yusa, F.Hakoshima, T.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 340-345

  • DOI: https://doi.org/10.1107/S1744309106010062
  • Primary Citation Related Structures: 
    2D2Q

  • PubMed Abstract: 

    ERM (ezrin/radixin/moesin) proteins bind to the cytoplasmic tail of adhesion molecules in the formation of the membrane-associated cytoskeleton. The binding site is located in the FERM (4.1 and ERM) domain, a domain that is masked in the inactive form. A conventional masking motif, strand 1 (residues 494-500 in radixin), has previously been identified in the C-terminal tail domain. Here, the crystal structure of dimerized radixin FERM domains (residues 1-310) is presented in which the binding site of one molecule is occupied by the C-terminal residues (residues 295-304, strand 2) of the other molecule. The residues contain a conserved motif that is compatible with that identified in the adhesion molecules. The residues might serve as a second masking region in the inactive form of ERM proteins.


  • Organizational Affiliation
    • Structural Biology Laboratory, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan.

Macromolecule Content 

  • Total Structure Weight: 73.56 kDa 
  • Atom Count: 5,016 
  • Modeled Residue Count: 599 
  • Deposited Residue Count: 620 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Radixin
A, B
310Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P26043 (Mus musculus)
Explore P26043 
Go to UniProtKB:  P26043
IMPC:  MGI:97887
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26043
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free:  0.269 (Depositor), 0.266 (DCC) 
  • R-Value Work:  0.222 (Depositor), 0.221 (DCC) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.218α = 90
b = 70.218β = 98.97
c = 110.81γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
CNSrefinement
HKL-2000data reduction
CNSphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-04-18
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references