2CZ8

Crystal Structure of tt0972 protein from Thermus thermophilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.205 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Crystal Structure of tt0972 protein from Thermus thermophilus

Kumei, M.Inagaki, E.Nakano, N.Shinkai, A.Yokoyama, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
tt0972 protein
A, B, C, D, E
A, B, C, D, E, F, G, H
69Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SIE3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q5SIE3 
Go to UniProtKB:  Q5SIE3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5SIE3
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download Ideal Coordinates CCD File 
CA [auth H]
K [auth A]
M [auth B]
O [auth C]
R [auth D]
CA [auth H],
K [auth A],
M [auth B],
O [auth C],
R [auth D],
U [auth E],
W [auth F],
Z [auth G]
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
PO4
Query on PO4

Download Ideal Coordinates CCD File 
AA [auth H]
BA [auth H]
I [auth A]
L [auth B]
P [auth D]
AA [auth H],
BA [auth H],
I [auth A],
L [auth B],
P [auth D],
Q [auth D],
S [auth E],
V [auth F],
X [auth G]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
K
Query on K

Download Ideal Coordinates CCD File 
J [auth A],
N [auth C],
T [auth E],
Y [auth G]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.205 
  • Space Group: P 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.36α = 90
b = 66.36β = 90
c = 124.566γ = 120
Software Package:
Software NamePurpose
CNSrefinement
BSSdata collection
SCALEPACKdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-09-19
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Source and taxonomy, Version format compliance
  • Version 1.3: 2023-10-25
    Changes: Data collection, Database references, Derived calculations, Refinement description