2CT5

Solution Structure of the zinc finger BED domain of the zinc finger BED domain containing protein 1

• PDB DOI: https://doi.org/10.2210/pdb2CT5/pdb
• BMRB: 11319

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2005-05-23 Released: 2005-11-23 
• Deposition Author(s): Miyamoto, K., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the least restraint violations 

Literature

Solution Structure of the zinc finger BED domain of the zinc finger BED domain containing protein 1

Miyamoto, K., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 8.14 kDa 
• Atom Count: 566 
• Modelled Residue Count: 73 
• Deposited Residue Count: 73 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger BED domain containing protein 1	A	73	Homo sapiens	Mutation(s): 0  Gene Names: ZBED1X EC: 2.3.2
UniProt & NIH Common Fund Data Resources
Find proteins for O96006 (Homo sapiens) Explore O96006  Go to UniProtKB:  O96006
PHAROS:  O96006 GTEx:  ENSG00000214717

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-23 
Deposition Author(s): Miyamoto, K., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-11-23
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection