2CKU | pdb_00002cku

Solution structure of 2F13F1 from human fibronectin


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 15 
  • Selection Criteria: LEAST RESTRAINT VIOLATION 

wwPDB Validation 3D Report Full Report

Validation slider image for 2CKU

This is version 1.5 of the entry. See complete history

Literature

The Solution and Crystal Structures of a Module Pair from the Staphylococcus Aureus-Binding Site of Human Fibronectin-A Tale with a Twist.

Rudino-Pinera, E.Ravelli, R.B.G.Sheldrick, G.M.Nanao, M.H.Korostelev, V.V.Werner, J.M.Schwarz-Linek, U.Potts, J.R.Garman, E.F.

(2007) J Mol Biology 368: 833

  • DOI: https://doi.org/10.1016/j.jmb.2007.02.061
  • Primary Citation Related Structures: 
    2CG6, 2CG7, 2CKU

  • PubMed Abstract: 

    An important goal of structural studies of modular proteins is to determine the inter-module orientation, which often influences biological function. The N-terminal domain of human fibronectin (Fn) is composed of a string of five type 1 modules (F1). Despite their small size, to date F1 modules have proved intractable to X-ray structure solution, although there are several NMR structures available. Here, we present the first structures (two X-ray models and an NMR-derived model) of the (2)F1(3)F1 module pair, which forms part of the binding site for Fn-binding proteins from pathogenic bacteria. The crystallographic structure determination was aided by the novel technique of UV radiation damage-induced phasing. The individual module structures are very similar in all three models. In the NMR structure and one of the X-ray structures, a similar but smaller interdomain interface than that observed previously for (4)F1(5)F1 is seen. The other X-ray structure has a different interdomain orientation. This work underlines the benefits of combining X-ray and NMR data in the studies of multi-domain proteins.


  • Organizational Affiliation
    • Department of Biochemistry, University of Oxford, South Parks Road, Oxford, UK.

Macromolecule Content 

  • Total Structure Weight: 10.12 kDa 
  • Atom Count: 698 
  • Modeled Residue Count: 89 
  • Deposited Residue Count: 90 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FIBRONECTIN90Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P02751 (Homo sapiens)
Explore P02751 
Go to UniProtKB:  P02751
PHAROS:  P02751
GTEx:  ENSG00000115414 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02751
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 15 
  • Selection Criteria: LEAST RESTRAINT VIOLATION 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-04-03
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-08-21
    Changes: Data collection
  • Version 1.4: 2021-06-23
    Changes: Data collection
  • Version 1.5: 2024-10-16
    Changes: Data collection, Database references, Structure summary