2CHV | pdb_00002chv

Replication Factor C ADPNP complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.00 Å
  • R-Value Free: 
    0.498 (Depositor) 
  • R-Value Work: 
    0.492 (Depositor), 0.413 (DCC) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2CHV

This is version 1.3 of the entry. See complete history

Literature

Communication between Subunits within an Archaeal Clamp-Loader Complex.

Seybert, A.Singleton, M.R.Cook, N.Hall, D.R.Wigley, D.B.

(2006) EMBO J 25: 2209

  • DOI: https://doi.org/10.1038/sj.emboj.7601093
  • Primary Citation Related Structures: 
    2CHG, 2CHQ, 2CHV

  • PubMed Abstract: 

    We have investigated the communication between subunits in replication factor C (RFC) from Archaeoglobus fulgidus. Mutation of the proposed arginine finger in the small subunits results in a complex that can still bind ATP but has impaired clamp-loading activity, a process that normally only requires binding of nucleotide. The small subunit alone forms a hexameric ring that is six-fold symmetric in the absence of ATP. However, this symmetry is broken when the nucleotide is bound to the complex. A conformational change associated with nucleotide binding may relate to the opening of PCNA rings by RFC during the loading reaction. The structures also reveal the importance of the N-terminal helix of each subunit at the ATP-binding site. Analysis of mutant protein complexes containing subunits lacking this N-terminal helix reveals key distinct regulatory roles during clamp loading that are different for the large and small subunits in the RFC complex.


  • Organizational Affiliation
    • Clare Hall Laboratories, Cancer Research UK, London Research Institute, South Mimms Potters Bar, Herts, UK.

Macromolecule Content 

  • Total Structure Weight: 216.24 kDa 
  • Atom Count: 14,838 
  • Modeled Residue Count: 1,884 
  • Deposited Residue Count: 1,914 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
REPLICATION FACTOR C SMALL SUBUNIT
A, B, C, D, E
A, B, C, D, E, F
319Archaeoglobus fulgidusMutation(s): 0 
UniProt
Find proteins for O28219 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16))
Explore O28219 
Go to UniProtKB:  O28219
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO28219
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.00 Å
  • R-Value Free:  0.498 (Depositor) 
  • R-Value Work:  0.492 (Depositor), 0.413 (DCC) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 123.907α = 90
b = 134.225β = 90
c = 146.414γ = 90

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-06-06
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-05-08
    Changes: Data collection, Database references, Other