2C2W | pdb_00002c2w

The fluorinase from Streptomyces cattleya is also a chlorinase. Structure of 5'-chloro-5'-deoxyadenosine crystallised in the fluorinase.

PDB DOI: https://doi.org/10.2210/pdb2C2W/pdb

Classification: TRANSFERASE
Organism(s): Streptantibioticus cattleyicolor
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2005-09-30 Released: 2005-12-19
Deposition Author(s): McEwan, A.R., Naismith, J.H., O'Hagan, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.249 (Depositor), 0.277 (DCC)
R-Value Work:
0.196 (Depositor)
R-Value Observed:
0.198 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

The fluorinase from Streptomyces cattleya is also a chlorinase.

Deng, H., Cobb, S.L., McEwan, A.R., McGlinchey, R.P., Naismith, J.H., O'Hagan, D., Robinson, D.A., Spencer, J.B.

(2006) Angew Chem Int Ed Engl 45: 759-762

PubMed: 16370017 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1002/anie.200503582
Primary Citation Related Structures:
2C2W

Organizational Affiliation

School of Chemistry and Centre for Biomolecular Science, University of St Andrews, St Andrews, KY16 9ST, UK.

Macromolecule Content

Total Structure Weight: 98.31 kDa
Atom Count: 7,310
Modeled Residue Count: 873
Deposited Residue Count: 897
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE	A, B, C	299	Streptantibioticus cattleyicolor	Mutation(s): 0 EC: 2.5.1.63
UniProt
Find proteins for Q70GK9 (Streptantibioticus cattleyicolor) Explore Q70GK9 Go to UniProtKB: Q70GK9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q70GK9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
5CD Query on 5CD Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain H [auth B] SDF format, chain K [auth C] MOL2 format, chain D [auth A] MOL2 format, chain H [auth B] MOL2 format, chain K [auth C] mmCIF format, chain D [auth A] mmCIF format, chain H [auth B] mmCIF format, chain K [auth C]	D [auth A], H [auth B], K [auth C]	5'-CHLORO-5'-DEOXYADENOSINE C₁₀ H₁₂ Cl N₅ O₃ IYSNPOMTKFZDHZ-KQYNXXCUSA-N		Interactions Focus chain D [auth A] Focus chain H [auth B] Focus chain K [auth C] Interactions & Density Focus chain D [auth A] Focus chain H [auth B] Focus chain K [auth C]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain L [auth C] SDF format, chain M [auth C] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain L [auth C] MOL2 format, chain M [auth C] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain I [auth B] mmCIF format, chain J [auth B] mmCIF format, chain L [auth C] mmCIF format, chain M [auth C]	E [auth A] F [auth A] G [auth A] I [auth B] J [auth B] E [auth A], F [auth A], G [auth A], I [auth B], J [auth B], L [auth C], M [auth C]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain L [auth C] Focus chain M [auth C] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain L [auth C] Focus chain M [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.249 (Depositor), 0.277 (DCC)
R-Value Work: 0.196 (Depositor)
R-Value Observed: 0.198 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.51	α = 90
b = 129.206	β = 90
c = 183.153	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2005-12-19

Deposition Author(s):

McEwan, A.R.

Naismith, J.H.

O'Hagan, D.

Revision History (Full details and data files)

Version 1.0: 2005-12-19
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2018-03-28
Changes: Database references, Structure summary
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description

2C2W | pdb_00002c2w

The fluorinase from Streptomyces cattleya is also a chlorinase. Structure of 5'-chloro-5'-deoxyadenosine crystallised in the fluorinase.

Literature

The fluorinase from Streptomyces cattleya is also a chlorinase.

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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