2B4W | pdb_00002b4w

Hypothetical protein from leishmania major

PDB DOI: https://doi.org/10.2210/pdb2B4W/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Leishmania major
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2005-09-26 Released: 2005-10-04
Deposition Author(s): Holmes, M.A., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free:
0.211 (Depositor), 0.203 (DCC)
R-Value Work:
0.148 (DCC)
R-Value Observed:
0.135 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2B4W

This is version 1.4 of the entry. See complete history.

Literature

Hypothetical protein from leishmania major

Holmes, M.A., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published.

Macromolecule Content

Total Structure Weight: 35.23 kDa
Atom Count: 2,435
Modeled Residue Count: 292
Deposited Residue Count: 315
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein, conserved	A	315	Leishmania major	Mutation(s): 5 Gene Names: LmjF10.1260
UniProt
Find proteins for Q4QH86 (Leishmania major) Explore Q4QH86 Go to UniProtKB: Q4QH86
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q4QH86
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.98 Å
R-Value Free: 0.211 (Depositor), 0.203 (DCC)
R-Value Work: 0.148 (DCC)
R-Value Observed: 0.135 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 97.4	α = 90
b = 97.4	β = 90
c = 113.6	γ = 120

Software Package:

Software Name	Purpose
SOLVE	phasing
RESOLVE	phasing
PDB_EXTRACT	data extraction
DENZO	data reduction
SCALEPACK	data scaling
SHELX	refinement
SHELXL-97	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2005-10-04

Deposition Author(s):

Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Revision History (Full details and data files)

Version 1.0: 2005-10-04
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.