2B0U | pdb_00002b0u

The Structure of the Follistatin:Activin Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 
    0.297 (Depositor), 0.240 (DCC) 
  • R-Value Work: 
    0.265 (Depositor), 0.269 (DCC) 
  • R-Value Observed: 
    0.301 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2B0U

This is version 1.5 of the entry. See complete history

Literature

The Structure of the Follistatin:Activin Complex Reveals Antagonism of Both Type I and Type II Receptor Binding.

Thompson, T.B.Lerch, T.F.Cook, R.W.Woodruff, T.K.Jardetzky, T.S.

(2005) Dev Cell 9: 535-543

  • DOI: https://doi.org/10.1016/j.devcel.2005.09.008
  • Primary Citation Related Structures: 
    2B0U

  • PubMed Abstract: 

    TGF-beta ligands stimulate diverse cellular differentiation and growth responses by signaling through type I and II receptors. Ligand antagonists, such as follistatin, block signaling and are essential regulators of physiological responses. Here we report the structure of activin A, a TGF-beta ligand, bound to the high-affinity antagonist follistatin. Two follistatin molecules encircle activin, neutralizing the ligand by burying one-third of its residues and its receptor binding sites. Previous studies have suggested that type I receptor binding would not be blocked by follistatin, but the crystal structure reveals that the follistatin N-terminal domain has an unexpected fold that mimics a universal type I receptor motif and occupies this receptor binding site. The formation of follistatin:BMP:type I receptor complexes can be explained by the stoichiometric and geometric arrangement of the activin:follistatin complex. The mode of ligand binding by follistatin has important implications for its ability to neutralize homo- and heterodimeric ligands of this growth factor family.


  • Organizational Affiliation
    • Department of Biochemistry, Northwestern University, Evanston, Illinois 60208, USA.

Macromolecule Content 

  • Total Structure Weight: 90.66 kDa 
  • Atom Count: 6,045 
  • Modeled Residue Count: 799 
  • Deposited Residue Count: 808 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Inhibin beta A chain
A, B
116Homo sapiensMutation(s): 0 
Gene Names: INHBA
UniProt & NIH Common Fund Data Resources
Find proteins for P08476 (Homo sapiens)
Explore P08476 
Go to UniProtKB:  P08476
PHAROS:  P08476
GTEx:  ENSG00000122641 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08476
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Follistatin
C, D
288Homo sapiensMutation(s): 0 
Gene Names: FST
UniProt & NIH Common Fund Data Resources
Find proteins for P19883 (Homo sapiens)
Explore P19883 
Go to UniProtKB:  P19883
PHAROS:  P19883
GTEx:  ENSG00000134363 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19883
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
IR3

Query on IR3



Download:Ideal Coordinates CCD File
E [auth A],
I [auth B],
K [auth C],
L [auth C],
N [auth D]
IRIDIUM (III) ION
Ir
MILUBEOXRNEUHS-UHFFFAOYSA-N
MPD

Query on MPD



Download:Ideal Coordinates CCD File
J [auth B](4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
MLI

Query on MLI



Download:Ideal Coordinates CCD File
F [auth A],
G [auth A],
H [auth A],
M [auth C]
MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free:  0.297 (Depositor), 0.240 (DCC) 
  • R-Value Work:  0.265 (Depositor), 0.269 (DCC) 
  • R-Value Observed: 0.301 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 109.25α = 90
b = 120.82β = 90
c = 70.57γ = 90
Software Package:
Software NamePurpose
SCALAdata scaling
SHARPphasing
CNSrefinement
PDB_EXTRACTdata extraction
MAR345data collection
CCP4data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-10-11
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-07-27
    Changes: Version format compliance
  • Version 1.4: 2017-10-11
    Changes: Refinement description
  • Version 1.5: 2024-10-30
    Changes: Data collection, Database references, Derived calculations, Structure summary