28YC | pdb_000028yc

pentameric MscL from Escherichia coli in nanodiscs


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

The Structure of Escherichia coli MscL and Its Dimer Formation in Nanodiscs.

Rasmussen, T.Bahner, J.I.Flegler, V.J.Hove, T.T.Kraft, C.Rasmussen, A.Bottcher, B.

(2026) J Mol Biol 438: 169967-169967

  • DOI: https://doi.org/10.1016/j.jmb.2026.169967
  • Primary Citation Related Structures: 
    28YC

  • PubMed Abstract: 

    Mechanosensitive channels of large conductance (MscL) are essential bacterial safety valves that prevent osmotic lysis by releasing solutes in response to membrane tension. Despite extensive functional studies on Escherichia coli MscL (EcMscL), its high-resolution structure remained unknown. Using cryo-electron microscopy, we present an experimental structure of EcMscL reconstituted in nanodiscs at 3.1 Å resolution. The structure reveals a pentameric assembly with a narrow hydrophobic gate at the cytosolic side and a periplasmic cavity, consistent with the canonical MscL-fold. Differences to earlier published crystal structures of MscL from other organisms are in the less conserved periplasmic loop. We observe a previously unreported dimeric association of EcMscL pentamers, mediated by residues 61-63 in the periplasmic loop. This dimeric interface is located at the periplasmic side and provides a structural basis for the formation of higher-order clusters. The observed arrangement enables a fluid-like, mosaic packing of channels with centre-to-centre distances of 5.9-9 nm, consistent with biophysical and imaging data. These findings provide a structural framework for understanding cluster organisation of EcMscL that modulates its activity in cellular stress response.


  • Organizational Affiliation
    • Julius-Maximilians-Universität Würzburg, Biocenter and Rudolf-Virchow-Center, Josef-Schneider-Str. 2, Gebäude D15, 97080 Würzburg, Germany.

Macromolecule Content 

  • Total Structure Weight: 79.01 kDa 
  • Atom Count: 3,785 
  • Modeled Residue Count: 490 
  • Deposited Residue Count: 710 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Large-conductance mechanosensitive channel
A, B, C, D, E
142Escherichia coliMutation(s): 0 
Gene Names: mscLyhdCb3291JW3252
UniProt
Find proteins for P0A742 (Escherichia coli (strain K12))
Explore P0A742 
Go to UniProtKB:  P0A742
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A742
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.7
MODEL REFINEMENTPHENIX1.20.1_4487

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany359471283
German Research Foundation (DFG)Germany456578072
German Research Foundation (DFG)Germany525040890

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-26
    Type: Initial release