28LN | pdb_000028ln

XBP1u-stalled RPL4 RNC in complex with NAC


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

NAC promotes co-translational protein folding at the ribosomal tunnel exit.

Santos, J.Gunnigmann, M.Gora, R.J.Iljina, M.Predin, M.Kotan, I.E.De, P.Choudhary, D.Jang, J.Tippmann, F.Hins, C.Ban, N.Tans, S.J.Shan, S.O.Kramer, G.Bukau, B.

(2026) Mol Cell 86: 1311-1326.e11

  • DOI: https://doi.org/10.1016/j.molcel.2026.02.022
  • Primary Citation Related Structures: 
    28LN

  • PubMed Abstract: 

    The nascent polypeptide-associated complex (NAC) coordinates enzymatic modifications and membrane targeting of nascent chains during translation. While the role of NAC as a dynamic hub for other factors is well established, its direct role in co-translational folding is unclear. By proteome-wide profiling of co-translational NAC interactions in human cells, we found that NAC recognizes emerging segments enriched in hydrophobicity and α-helical propensity within folded domains of cytonuclear proteins. Single-molecule and structural analyses reveal that NAC, via its β-barrel domain, dynamically interacts with nascent chains at the ribosomal tunnel exit and is capable of promoting on-pathway folding. Compartment-specific nascent chain interactions of NAC further elucidate its role in targeting to the endoplasmic reticulum and in mitochondrial membrane protein biogenesis. Together, these findings show that human NAC acts as a bona fide co-translational chaperone that directly promotes early protein folding at the ribosomal tunnel exit, expanding its functional repertoire in protein biogenesis.


  • Organizational Affiliation
    • Center for Molecular Biology of the University of Heidelberg (ZMBH), DKFZ-ZMBH Alliance, Heidelberg, Germany.

Macromolecule Content 

  • Total Structure Weight: 3,945.08 kDa 
  • Atom Count: 220,645 
  • Modeled Residue Count: 17,776 
  • Deposited Residue Count: 21,147 
  • Unique protein chains: 80
  • Unique nucleic acid chains: 6

Macromolecules


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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal formA [auth B1]184Homo sapiensMutation(s): 0 
Gene Names: RPL4RPL1XBP1TREB5XBP2
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GTEx:  ENSG00000100219 
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UniProt GroupP17861
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2G [auth BA]257Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161016 
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3H [auth BB]403Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100316 
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L4I [auth BC]427Homo sapiensMutation(s): 0 
Gene Names: RPL4RPL1
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GTEx:  ENSG00000174444 
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L5J [auth BD]297Homo sapiensMutation(s): 0 
Gene Names: RPL5MSTP030
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GTEx:  ENSG00000122406 
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL6K [auth BE]288Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000089009 
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL30L [auth BF]248Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000147604 
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Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aM [auth BG]266Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000148303 
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L9N [auth BH]192Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163682 
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Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L10O [auth BI]214Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000147403 
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Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L11P [auth BJ]178Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142676 
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Entity ID: 17
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L13Q [auth BL]211Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000167526 
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Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L14R [auth BM]215Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000188846 
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Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L15S [auth BN]204Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000174748 
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Entity ID: 20
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L13aT [auth BO]203Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142541 
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Entity ID: 21
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L17U [auth BP]184Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000265681 
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Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L18V [auth BQ]188Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000063177 
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Entity ID: 23
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L19W [auth BR]196Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108298 
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Entity ID: 24
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L18aX [auth BS]176Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105640 
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Entity ID: 25
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L21Y [auth BT]160Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000122026 
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Entity ID: 26
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L22Z [auth BU]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000116251 
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Entity ID: 27
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L23AA [auth BV]140Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000125691 
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Entity ID: 28
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L24BA [auth BW]157Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000114391 
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Entity ID: 29
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L23aCA [auth BX]156Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198242 
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Entity ID: 30
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L26DA [auth BY]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161970 
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Entity ID: 31
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L27EA [auth BZ]136Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000131469 
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Entity ID: 32
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL15FA [auth Ba]148Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000166441 
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Entity ID: 33
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL29GA [auth Bb]159Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000162244 
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Entity ID: 34
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L30HA [auth Bc]115Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000156482 
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Entity ID: 35
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L31IA [auth Bd]125Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000071082 
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Entity ID: 36
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L32JA [auth Be]135Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000144713 
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Entity ID: 37
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L35aKA [auth Bf]110Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000182899 
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Entity ID: 38
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L34LA [auth Bg]117Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000109475 
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Entity ID: 39
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L35MA [auth Bh]123Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000136942 
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Entity ID: 40
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L36NA [auth Bi]105Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000130255 
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Entity ID: 41
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL37OA [auth Bj]97Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000145592 
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Entity ID: 42
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L38PA [auth Bk]70Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000172809 
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Entity ID: 43
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L39QA [auth Bl]51Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198918 
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Entity ID: 44
MoleculeChains  Sequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40RA [auth Bm]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000221983 
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Entity ID: 45
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL42SA [auth Bo]106Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000241343 
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Entity ID: 46
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aTA [auth Bp]92Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197756 
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Entity ID: 47
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL28UA [auth Br]137Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000108107 
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Entity ID: 48
MoleculeChains  Sequence LengthOrganismDetailsImage
60S acidic ribosomal protein P0VA [auth Bs]317Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000089157 
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Entity ID: 49
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL11WA [auth Bt]165Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197958 
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Entity ID: 50
MoleculeChains  Sequence LengthOrganismDetailsImage
Nascent polypeptide-associated complex subunit alphaXA [auth Bu]215Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000196531 
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Entity ID: 51
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription factor BTF3YA [auth Bv]206Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000145741 
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Entity ID: 53
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2AB [auth AA]295Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000168028 
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Entity ID: 54
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aBB [auth AB]264Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000145425 
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Entity ID: 55
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S2CB [auth AC]293Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000140988 
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Entity ID: 56
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S3DB [auth AD]243Homo sapiensMutation(s): 0 
EC: 4.2.99.18
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GTEx:  ENSG00000149273 
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Entity ID: 57
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS4, X isoformEB [auth AE]263Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198034 
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Entity ID: 58
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S5FB [auth AF]204Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000083845 
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Entity ID: 59
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S6GB [auth AG]249Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137154 
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Entity ID: 60
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S7HB [auth AH]194Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171863 
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Entity ID: 61
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S8IB [auth AI]208Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142937 
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Entity ID: 62
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S9JB [auth AJ]194Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000170889 
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Entity ID: 63
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S10KB [auth AK]165Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000124614 
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Entity ID: 64
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS17LB [auth AL]158Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142534 
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Entity ID: 65
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S12MB [auth AM]132Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000112306 
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Entity ID: 66
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S13NB [auth AN]151Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000110700 
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Entity ID: 67
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S14OB [auth AO]151Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000164587 
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Entity ID: 68
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S15PB [auth AP]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000115268 
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Entity ID: 69
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S16QB [auth AQ]146Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105193 
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Entity ID: 70
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S17RB [auth AR]135Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000182774 
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Entity ID: 71
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS13SB [auth AS]152Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000231500 
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Entity ID: 72
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS19TB [auth AT]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105372 
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Entity ID: 73
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S20UB [auth AU]119Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000008988 
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Entity ID: 74
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS21VB [auth AV]84Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000171858 
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Entity ID: 75
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S15aWB [auth AW]130Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000134419 
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Entity ID: 76
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS12XB [auth AX]143Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186468 
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Entity ID: 77
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S24YB [auth AY]133Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000138326 
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Entity ID: 78
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS25ZB [auth AZ]125Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000118181 
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Entity ID: 79
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S26AC [auth Aa]115Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197728 
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Entity ID: 80
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S27BC [auth Ab]84Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000177954 
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Entity ID: 81
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S28CC [auth Ac]69Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000233927 
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Entity ID: 82
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S29DC [auth Ad]56Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000213741 
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Entity ID: 83
MoleculeChains  Sequence LengthOrganismDetailsImage
Ubiquitin-like FUBI-ribosomal protein eS30 fusion proteinEC [auth Ae]133Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000149806 
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Entity ID: 84
MoleculeChains  Sequence LengthOrganismDetailsImage
UbiquitinFC [auth Af]156Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000143947 
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Entity ID: 85
MoleculeChains  Sequence LengthOrganismDetailsImage
Receptor of activated protein C kinase 1GC [auth Ag]317Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000204628 
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Entity ID: 86
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L41HC [auth Ah]25Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000229117 
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Entity ID: 2
MoleculeChains LengthOrganismImage
tRNA-Met-CATB [auth B2]76Homo sapiens
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Entity ID: 3
MoleculeChains LengthOrganismImage
mRNA fragment (6-MER)C [auth B4]6Homo sapiens
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Entity ID: 4
MoleculeChains LengthOrganismImage
28S rRNAD [auth B5]5,069Homo sapiens
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Entity ID: 5
MoleculeChains LengthOrganismImage
5S rRNAE [auth B7]120Homo sapiens
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Entity ID: 6
MoleculeChains LengthOrganismImage
5.8S rRNAF [auth B8]157Homo sapiens
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Entity ID: 52
MoleculeChains LengthOrganismImage
18S rRNAZA [auth A2]1,869Homo sapiens
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Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN

Query on ZN



Download:Ideal Coordinates CCD File
BO [auth Bg]
DO [auth Bj]
DT [auth Aa]
ET [auth Ad]
FO [auth Bm]
BO [auth Bg],
DO [auth Bj],
DT [auth Aa],
ET [auth Ad],
FO [auth Bm],
FT [auth Af],
GO [auth Bo],
HO [auth Bp]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
AD [auth B5]
AE [auth B5]
AF [auth B5]
AG [auth B5]
AH [auth B5]
AD [auth B5],
AE [auth B5],
AF [auth B5],
AG [auth B5],
AH [auth B5],
AI [auth B5],
AJ [auth B5],
AK [auth B5],
AL [auth B5],
AM [auth B5],
AN [auth B5],
AO [auth Bf],
AP [auth A2],
AQ [auth A2],
AR [auth A2],
AS [auth A2],
AT [auth A2],
BD [auth B5],
BE [auth B5],
BF [auth B5],
BG [auth B5],
BH [auth B5],
BI [auth B5],
BJ [auth B5],
BK [auth B5],
BL [auth B5],
BM [auth B5],
BN [auth B5],
BP [auth A2],
BQ [auth A2],
BR [auth A2],
BS [auth A2],
BT [auth AI],
CD [auth B5],
CE [auth B5],
CF [auth B5],
CG [auth B5],
CH [auth B5],
CI [auth B5],
CJ [auth B5],
CK [auth B5],
CL [auth B5],
CM [auth B5],
CN [auth B5],
CO [auth Bg],
CP [auth A2],
CQ [auth A2],
CR [auth A2],
CS [auth A2],
CT [auth AX],
DD [auth B5],
DE [auth B5],
DF [auth B5],
DG [auth B5],
DH [auth B5],
DI [auth B5],
DJ [auth B5],
DK [auth B5],
DL [auth B5],
DM [auth B5],
DN [auth B5],
DP [auth A2],
DQ [auth A2],
DR [auth A2],
DS [auth A2],
ED [auth B5],
EE [auth B5],
EF [auth B5],
EG [auth B5],
EH [auth B5],
EI [auth B5],
EJ [auth B5],
EK [auth B5],
EL [auth B5],
EM [auth B5],
EN [auth B5],
EO [auth Bj],
EP [auth A2],
EQ [auth A2],
ER [auth A2],
ES [auth A2],
FD [auth B5],
FE [auth B5],
FF [auth B5],
FG [auth B5],
FH [auth B5],
FI [auth B5],
FJ [auth B5],
FK [auth B5],
FL [auth B5],
FM [auth B5],
FN [auth B5],
FP [auth A2],
FQ [auth A2],
FR [auth A2],
FS [auth A2],
GD [auth B5],
GE [auth B5],
GF [auth B5],
GG [auth B5],
GH [auth B5],
GI [auth B5],
GJ [auth B5],
GK [auth B5],
GL [auth B5],
GM [auth B5],
GN [auth B5],
GP [auth A2],
GQ [auth A2],
GR [auth A2],
GS [auth A2],
HD [auth B5],
HE [auth B5],
HF [auth B5],
HG [auth B5],
HH [auth B5],
HI [auth B5],
HJ [auth B5],
HK [auth B5],
HL [auth B5],
HM [auth B5],
HN [auth B7],
HP [auth A2],
HQ [auth A2],
HR [auth A2],
HS [auth A2],
IC [auth B5],
ID [auth B5],
IE [auth B5],
IF [auth B5],
IG [auth B5],
IH [auth B5],
II [auth B5],
IJ [auth B5],
IK [auth B5],
IL [auth B5],
IM [auth B5],
IN [auth B7],
IO [auth A2],
IP [auth A2],
IQ [auth A2],
IR [auth A2],
IS [auth A2],
JC [auth B5],
JD [auth B5],
JE [auth B5],
JF [auth B5],
JG [auth B5],
JH [auth B5],
JI [auth B5],
JJ [auth B5],
JK [auth B5],
JL [auth B5],
JM [auth B5],
JN [auth B7],
JO [auth A2],
JP [auth A2],
JQ [auth A2],
JR [auth A2],
JS [auth A2],
KC [auth B5],
KD [auth B5],
KE [auth B5],
KF [auth B5],
KG [auth B5],
KH [auth B5],
KI [auth B5],
KJ [auth B5],
KK [auth B5],
KL [auth B5],
KM [auth B5],
KN [auth B7],
KO [auth A2],
KP [auth A2],
KQ [auth A2],
KR [auth A2],
KS [auth A2],
LC [auth B5],
LD [auth B5],
LE [auth B5],
LF [auth B5],
LG [auth B5],
LH [auth B5],
LI [auth B5],
LJ [auth B5],
LK [auth B5],
LL [auth B5],
LM [auth B5],
LN [auth B8],
LO [auth A2],
LP [auth A2],
LQ [auth A2],
LR [auth A2],
LS [auth A2],
MC [auth B5],
MD [auth B5],
ME [auth B5],
MF [auth B5],
MG [auth B5],
MH [auth B5],
MI [auth B5],
MJ [auth B5],
MK [auth B5],
ML [auth B5],
MM [auth B5],
MN [auth B8],
MO [auth A2],
MP [auth A2],
MQ [auth A2],
MR [auth A2],
MS [auth A2],
NC [auth B5],
ND [auth B5],
NE [auth B5],
NF [auth B5],
NG [auth B5],
NH [auth B5],
NI [auth B5],
NJ [auth B5],
NK [auth B5],
NL [auth B5],
NM [auth B5],
NN [auth B8],
NO [auth A2],
NP [auth A2],
NQ [auth A2],
NR [auth A2],
NS [auth A2],
OC [auth B5],
OD [auth B5],
OE [auth B5],
OF [auth B5],
OG [auth B5],
OH [auth B5],
OI [auth B5],
OJ [auth B5],
OK [auth B5],
OL [auth B5],
OM [auth B5],
ON [auth B8],
OO [auth A2],
OP [auth A2],
OQ [auth A2],
OR [auth A2],
OS [auth A2],
PC [auth B5],
PD [auth B5],
PE [auth B5],
PF [auth B5],
PG [auth B5],
PH [auth B5],
PI [auth B5],
PJ [auth B5],
PK [auth B5],
PL [auth B5],
PM [auth B5],
PN [auth B8],
PO [auth A2],
PP [auth A2],
PQ [auth A2],
PR [auth A2],
PS [auth A2],
QC [auth B5],
QD [auth B5],
QE [auth B5],
QF [auth B5],
QG [auth B5],
QH [auth B5],
QI [auth B5],
QJ [auth B5],
QK [auth B5],
QL [auth B5],
QM [auth B5],
QN [auth B8],
QO [auth A2],
QP [auth A2],
QQ [auth A2],
QR [auth A2],
QS [auth A2],
RC [auth B5],
RD [auth B5],
RE [auth B5],
RF [auth B5],
RG [auth B5],
RH [auth B5],
RI [auth B5],
RJ [auth B5],
RK [auth B5],
RL [auth B5],
RM [auth B5],
RN [auth BA],
RO [auth A2],
RP [auth A2],
RQ [auth A2],
RR [auth A2],
RS [auth A2],
SC [auth B5],
SD [auth B5],
SE [auth B5],
SF [auth B5],
SG [auth B5],
SH [auth B5],
SI [auth B5],
SJ [auth B5],
SK [auth B5],
SL [auth B5],
SM [auth B5],
SN [auth BA],
SO [auth A2],
SP [auth A2],
SQ [auth A2],
SR [auth A2],
SS [auth A2],
TC [auth B5],
TD [auth B5],
TE [auth B5],
TF [auth B5],
TG [auth B5],
TH [auth B5],
TI [auth B5],
TJ [auth B5],
TK [auth B5],
TL [auth B5],
TM [auth B5],
TN [auth BA],
TO [auth A2],
TP [auth A2],
TQ [auth A2],
TR [auth A2],
TS [auth A2],
UC [auth B5],
UD [auth B5],
UE [auth B5],
UF [auth B5],
UG [auth B5],
UH [auth B5],
UI [auth B5],
UJ [auth B5],
UK [auth B5],
UL [auth B5],
UM [auth B5],
UN [auth BB],
UO [auth A2],
UP [auth A2],
UQ [auth A2],
UR [auth A2],
US [auth A2],
VC [auth B5],
VD [auth B5],
VE [auth B5],
VF [auth B5],
VG [auth B5],
VH [auth B5],
VI [auth B5],
VJ [auth B5],
VK [auth B5],
VL [auth B5],
VM [auth B5],
VN [auth BN],
VO [auth A2],
VP [auth A2],
VQ [auth A2],
VR [auth A2],
VS [auth A2],
WC [auth B5],
WD [auth B5],
WE [auth B5],
WF [auth B5],
WG [auth B5],
WH [auth B5],
WI [auth B5],
WJ [auth B5],
WK [auth B5],
WL [auth B5],
WM [auth B5],
WN [auth BV],
WO [auth A2],
WP [auth A2],
WQ [auth A2],
WR [auth A2],
WS [auth A2],
XC [auth B5],
XD [auth B5],
XE [auth B5],
XF [auth B5],
XG [auth B5],
XH [auth B5],
XI [auth B5],
XJ [auth B5],
XK [auth B5],
XL [auth B5],
XM [auth B5],
XN [auth Ba],
XO [auth A2],
XP [auth A2],
XQ [auth A2],
XR [auth A2],
XS [auth A2],
YC [auth B5],
YD [auth B5],
YE [auth B5],
YF [auth B5],
YG [auth B5],
YH [auth B5],
YI [auth B5],
YJ [auth B5],
YK [auth B5],
YL [auth B5],
YM [auth B5],
YN [auth Be],
YO [auth A2],
YP [auth A2],
YQ [auth A2],
YR [auth A2],
YS [auth A2],
ZC [auth B5],
ZD [auth B5],
ZE [auth B5],
ZF [auth B5],
ZG [auth B5],
ZH [auth B5],
ZI [auth B5],
ZJ [auth B5],
ZK [auth B5],
ZL [auth B5],
ZM [auth B5],
ZN [auth Bf],
ZO [auth A2],
ZP [auth A2],
ZQ [auth A2],
ZR [auth A2],
ZS [auth A2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  5 Unique
IDChains TypeFormula2D DiagramParent
V5N
Query on V5N
G [auth BA]L-PEPTIDE LINKINGC6 H9 N3 O3HIS
HIC
Query on HIC
H [auth BB]L-PEPTIDE LINKINGC7 H11 N3 O2HIS
MLZ
Query on MLZ
GA [auth Bb]L-PEPTIDE LINKINGC7 H16 N2 O2LYS
NMM
Query on NMM
TB [auth AT]L-PEPTIDE LINKINGC7 H16 N4 O2ARG
HY3
Query on HY3
XB [auth AX]L-PEPTIDE LINKINGC5 H9 N O3PRO

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European UnionSyG-101072047
German Research Foundation (DFG)GermanyKR3593/4-1
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35 GM136321
National Science Foundation (NSF, United States)United States2219287
Swiss National Science FoundationSwitzerland310030_212308
European Molecular Biology Organization (EMBO)European Union--
Boehringer Ingelheim Fonds (BIF)Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2026-06-10
    Type: Initial release