24MC | pdb_000024mc

Structure of oocyte cytoplasmic lattices

PDB DOI: https://doi.org/10.2210/pdb24MC/pdb
EM Map EMD-69647: EMDB EMDataResource

Classification: CELL CYCLE
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2026-03-10 Released: 2026-05-06
Deposition Author(s): Liu, Q., Gui, M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Hierarchical assembly of native cytoplasmic lattices revealed by cryo-EM

Zhang, Y.L., Liu, Y., Liu, Q., Zhang, Q., Jin, J., Liu, S., Yang, S., Liu, Y., Peng, Y.J., Lai, M., Sun, Y., Zhang, Y.Y., Mei, Y., Tong, X., Zhang, S., Gui, M.

(2026) Vita

DOI: https://doi.org/10.15302/vita.2026.04.0030

Macromolecule Content

Total Structure Weight: 2,339.07 kDa
Atom Count: 138,959
Modeled Residue Count: 17,414
Deposited Residue Count: 20,608
Unique protein chains: 16

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
F-box and WD-40 domain protein 19	A [auth m]	466	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q8C2W8 (Mus musculus) Explore Q8C2W8 Go to UniProtKB: Q8C2W8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8C2W8
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
F-box and WD-40 domain protein 21	B [auth p]	468	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q8BI38 (Mus musculus) Explore Q8BI38 Go to UniProtKB: Q8BI38
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8BI38
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Inactive protein-arginine deiminase type-6	C [auth A] D [auth B] E [auth C] F [auth D] G [auth E] C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth K]	682	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8K3V4 (Mus musculus) Explore Q8K3V4 Go to UniProtKB: Q8K3V4
IMPC: MGI:2655198
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8K3V4
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
NLR family, pyrin domain containing 4F	M, R	937	Mus musculus	Mutation(s): 0
UniProt
Find proteins for L7N1W9 (Mus musculus) Explore L7N1W9 Go to UniProtKB: L7N1W9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	L7N1W9
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Oocyte-expressed protein homolog	N, U	164	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CWE6 (Mus musculus) Explore Q9CWE6 Go to UniProtKB: Q9CWE6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CWE6
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 2 of KH domain-containing protein 3	O	346	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CWU5 (Mus musculus) Explore Q9CWU5 Go to UniProtKB: Q9CWU5
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CWU5
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
NACHT, LRR and PYD domains-containing protein 5	P, S	1,163	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9R1M5 (Mus musculus) Explore Q9R1M5 Go to UniProtKB: Q9R1M5
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9R1M5
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Reference Sequence

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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Transducin-like enhancer protein 6	Q, T	581	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9WVB3 (Mus musculus) Explore Q9WVB3 Go to UniProtKB: Q9WVB3
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9WVB3
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Reference Sequence

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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger BED domain-containing protein 3	V	228	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9D0L1 (Mus musculus) Explore Q9D0L1 Go to UniProtKB: Q9D0L1
IMPC: MGI:1919364
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9D0L1
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Reference Sequence

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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Tubulin beta-2A chain	W, Z	445	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q7TMM9 (Mus musculus) Explore Q7TMM9 Go to UniProtKB: Q7TMM9
IMPC: MGI:107861
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7TMM9
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Reference Sequence

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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Tubulin alpha-1C chain	X, Y	449	Mus musculus	Mutation(s): 0 EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P68373 (Mus musculus) Explore P68373 Go to UniProtKB: P68373
IMPC: MGI:1095409
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P68373
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Reference Sequence

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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-conjugating enzyme E2 D3	AA [auth a], CA [auth c]	147	Mus musculus	Mutation(s): 0 EC: 2.3.2.23 (PDB Primary Data), 2.3.2.24 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P61079 (Mus musculus) Explore P61079 Go to UniProtKB: P61079
IMPC: MGI:1913355
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61079
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Reference Sequence

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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase UHRF1	BA [auth b], DA [auth d]	782	Mus musculus	Mutation(s): 0 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q8VDF2 (Mus musculus) Explore Q8VDF2 Go to UniProtKB: Q8VDF2
IMPC: MGI:1338889
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8VDF2
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Reference Sequence

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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
NACHT, LRR and PYD domains-containing protein 14	EA [auth e], FA [auth f]	993	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q6B966 (Mus musculus) Explore Q6B966 Go to UniProtKB: Q6B966
IMPC: MGI:1924108
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6B966
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Reference Sequence

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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
S-phase kinase-associated protein 1	GA [auth h], IA [auth j], JA [auth l]	163	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9WTX5 (Mus musculus) Explore Q9WTX5 Go to UniProtKB: Q9WTX5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9WTX5
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Reference Sequence

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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Expressed sequence C85627	HA [auth n]	469	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q3TSA9 (Mus musculus) Explore Q3TSA9 Go to UniProtKB: Q3TSA9
IMPC: MGI:3505704
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q3TSA9
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Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP (Subject of Investigation/LOI) Query on GTP Download:Ideal Coordinates CCD File SDF format, chain TA [auth Z] SDF format, chain RA [auth Y] SDF format, chain PA [auth X] SDF format, chain NA [auth W] MOL2 format, chain TA [auth Z] MOL2 format, chain RA [auth Y] MOL2 format, chain PA [auth X] MOL2 format, chain NA [auth W] mmCIF format, chain TA [auth Z] mmCIF format, chain RA [auth Y] mmCIF format, chain PA [auth X] mmCIF format, chain NA [auth W]	NA [auth W], PA [auth X], RA [auth Y], TA [auth Z]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain NA [auth W] Focus chain PA [auth X] Focus chain RA [auth Y] Focus chain TA [auth Z] Interactions & Density Focus chain NA [auth W] Focus chain PA [auth X] Focus chain RA [auth Y] Focus chain TA [auth Z]
ATP (Subject of Investigation/LOI) Query on ATP Download:Ideal Coordinates CCD File SDF format, chain BB [auth e] SDF format, chain CB [auth f] SDF format, chain MA [auth S] SDF format, chain LA [auth R] SDF format, chain KA [auth P] MOL2 format, chain BB [auth e] MOL2 format, chain CB [auth f] MOL2 format, chain MA [auth S] MOL2 format, chain LA [auth R] MOL2 format, chain KA [auth P] mmCIF format, chain BB [auth e] mmCIF format, chain CB [auth f] mmCIF format, chain MA [auth S] mmCIF format, chain LA [auth R] mmCIF format, chain KA [auth P]	BB [auth e], CB [auth f], KA [auth P], LA [auth R], MA [auth S]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain BB [auth e] Focus chain CB [auth f] Focus chain KA [auth P] Focus chain LA [auth R] Focus chain MA [auth S] Interactions & Density Focus chain BB [auth e] Focus chain CB [auth f] Focus chain KA [auth P] Focus chain LA [auth R] Focus chain MA [auth S]
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain AB [auth d] SDF format, chain VA [auth b] SDF format, chain WA [auth b] SDF format, chain YA [auth d] SDF format, chain ZA [auth d] SDF format, chain XA [auth b] MOL2 format, chain AB [auth d] MOL2 format, chain VA [auth b] MOL2 format, chain WA [auth b] MOL2 format, chain YA [auth d] MOL2 format, chain ZA [auth d] MOL2 format, chain XA [auth b] mmCIF format, chain AB [auth d] mmCIF format, chain VA [auth b] mmCIF format, chain WA [auth b] mmCIF format, chain YA [auth d] mmCIF format, chain ZA [auth d] mmCIF format, chain XA [auth b]	AB [auth d] VA [auth b] WA [auth b] XA [auth b] YA [auth d] AB [auth d], VA [auth b], WA [auth b], XA [auth b], YA [auth d], ZA [auth d]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain AB [auth d] Focus chain VA [auth b] Focus chain WA [auth b] Focus chain XA [auth b] Focus chain YA [auth d] Focus chain ZA [auth d] Interactions & Density Focus chain AB [auth d] Focus chain VA [auth b] Focus chain WA [auth b] Focus chain XA [auth b] Focus chain YA [auth d] Focus chain ZA [auth d]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain UA [auth Z] SDF format, chain SA [auth Y] SDF format, chain QA [auth X] SDF format, chain OA [auth W] MOL2 format, chain UA [auth Z] MOL2 format, chain SA [auth Y] MOL2 format, chain QA [auth X] MOL2 format, chain OA [auth W] mmCIF format, chain UA [auth Z] mmCIF format, chain SA [auth Y] mmCIF format, chain QA [auth X] mmCIF format, chain OA [auth W]	OA [auth W], QA [auth X], SA [auth Y], UA [auth Z]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain OA [auth W] Focus chain QA [auth X] Focus chain SA [auth Y] Focus chain UA [auth Z] Interactions & Density Focus chain OA [auth W] Focus chain QA [auth X] Focus chain SA [auth Y] Focus chain UA [auth Z]