Cryo-EM structure of Retron Ec78 complex (trans)
Lin, Z., Guo, M., Zhu, Y., Lu, Z., Huang, Z.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Macromolecule Content 
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Retron | 310 | Escherichia coli | Mutation(s): 0  | ![]() | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PtuA | 551 | Escherichia coli | Mutation(s): 0  | ![]() | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PtuB | 215 | Escherichia coli | Mutation(s): 0  | ![]() | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 4 | ||||
| Molecule | Chains | Length | Organism | Image |
|---|---|---|---|---|
| DNA (74-MER) | H [auth M] | 74 | Escherichia coli | ![]() |
Sequence AnnotationsExpand | ||||
Reference Sequence | ||||
Entity ID: 5 | ||||
| Molecule | Chains | Length | Organism | Image |
|---|---|---|---|---|
| RNA (66-MER) | I [auth N] | 66 | Escherichia coli | ![]() |
Sequence AnnotationsExpand | ||||
Reference Sequence | ||||
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP Download:Ideal Coordinates CCD File | J [auth B], K [auth C] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N | |||
| ADP Download:Ideal Coordinates CCD File | L [auth D] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
| ZN (Subject of Investigation/LOI) Download:Ideal Coordinates CCD File | M [auth F], N [auth G] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.21.2_5419 |
| RECONSTRUCTION | cryoSPARC |
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |