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 22ES | pdb_000022es

Gi bound kappa-opioid receptor in complex with difelikefalin


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.43 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 22ES

This is version 1.0 of the entry. See complete history. 

Literature

Gi bound kappa-opioid receptor in complex with difelikefalin

Zhang, H., Wang, R., Shi, P., He, X., Zhu, Q., Xu, Y., Yuan, Q., Hu, W., Wu, K., Zheng, Y., Zhou, L., Liang, J., Lv, P., Xu, Z., Zhuang, Y., Xu, H., Wang, Y., Tian, C.

To be published.

Macromolecule Content 

  • Total Structure Weight: 162.65 kDa 
  • Atom Count: 9,028 
  • Modeled Residue Count: 1,142 
  • Deposited Residue Count: 1,447 
  • Unique protein chains: 6

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1A [auth B]354Rattus norvegicusMutation(s): 0 
Gene Names: Gnb1
UniProt
Find proteins for P54311 (Rattus norvegicus)
Explore P54311 
Go to UniProtKB:  P54311
Entity Groups
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UniProt GroupP54311
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2B [auth C]71Bos taurusMutation(s): 0 
Gene Names: GNG2
UniProt
Find proteins for P63212 (Bos taurus)
Explore P63212 
Go to UniProtKB:  P63212
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UniProt GroupP63212
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Kappa-type opioid receptorC [auth R]397Homo sapiensMutation(s): 0 
Gene Names: OPRK1, OPRK
UniProt & NIH Common Fund Data Resources
Find proteins for P41145 (Homo sapiens)
Explore P41145 
Go to UniProtKB:  P41145
PHAROS:  P41145
GTEx:  ENSG00000082556 
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UniProt GroupP41145
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1354Homo sapiensMutation(s): 4 
Gene Names: GNAI1
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens)
Explore P63096 
Go to UniProtKB:  P63096
PHAROS:  P63096
GTEx:  ENSG00000127955 
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UniProt GroupP63096
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
scFv16266synthetic constructMutation(s): 0 
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
DPN-DPN-DLE-DLY-A1L9XF [auth A]5synthetic constructMutation(s): 0 
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  4 Unique
IDChains TypeFormula2D DiagramParent
A1L9X
Query on A1L9X
F [auth A]L-PEPTIDE LINKINGC6 H12 N2 O2

--

DLE
Query on DLE
F [auth A]D-PEPTIDE LINKINGC6 H13 N O2

--

DLY
Query on DLY
F [auth A]D-PEPTIDE LINKINGC6 H14 N2 O2

--

DPN
Query on DPN
F [auth A]D-PEPTIDE LINKINGC9 H11 N O2

--

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.43 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32130022

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-06
    Type: Initial release