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 20ZN | pdb_000020zn

Human FATP2 K572A mutant in complex with oleic acids and ATP in pre-catalytic state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 20ZN

This is version 1.2 of the entry. See complete history. 

Literature

Structural basis of fatty acid activation and transport by human FATP2.

Li, A., Shi, J., Xu, X., Yang, Y., Feng, S., Ma, D.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-76658-2
  • Primary Citation Related Structures: 
    20ZN, 9VZP

  • PubMed Abstract: 

    Fatty acid transport proteins (FATPs) are responsible for efficient uptake of fatty acids (FAs), essential biomolecules that play critical roles in development and growth. However, the lack of three-dimensional structures of FATPs has hindered our understanding of their mechanisms. Here, we report two cryo-EM structures of human FATP2a: wild-type (WT) FATP2a in intermediate state at 2.93 Å and a catalytic mutant of FATP2a in pre-catalytic state at 2.76 Å. In the two structures, both the oleoyl-AMP intermediate and ATP occupy the same central pocket with the acyl group of oleoyl-AMP pointing upwards and placed in a hydrophobic tunnel while the phosphate groups of ATP pointing downwards and interacting with a central loop. The structures also reveal that FAs from the membrane must undergo a two-step translocation to access the catalytic center. The binding of a new FA before the completion of a working cycle may be crucial to ensure the catalytic and transport efficiency. Furthermore, we demonstrate that FATP2a transport FAs, strictly dependent on the activation of FAs through the acyl-CoA synthetase activity. Our findings provide important insights into the working mechanism of FATPs and offer a structural basis for the development of inhibitors targeting FATPs to treat related diseases.


  • Organizational Affiliation: 
    • State Key Laboratory of Gene Expression, Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, China.

Macromolecule Content 

  • Total Structure Weight: 71.44 kDa 
  • Atom Count: 4,940 
  • Modeled Residue Count: 608 
  • Deposited Residue Count: 620 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Long-chain fatty acid transport protein 2620Homo sapiensMutation(s): 0 
Gene Names: SLC27A2, ACSVL1, FACVL1, FATP2, VLACS
EC: 6.2.1.15 (PDB Primary Data), 6.2.1.3 (PDB Primary Data), 6.2.1.24 (PDB Primary Data), 6.2.1.7 (PDB Primary Data), 6.2.1 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for O14975 (Homo sapiens)
Explore O14975 
Go to UniProtKB:  O14975
PHAROS:  O14975
GTEx:  ENSG00000140284 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14975
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.17.1_3660
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2022YFA1303700

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-05
    Type: Initial release
  • Version 1.1: 2026-09-23
    Changes: Data collection, Database references
  • Version 1.2: 2026-09-30
    Changes: Data collection, Database references