1NKV | pdb_00001nkv

X-RAY STRUCTURE OF YJHP FROM E.COLI NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER13

• PDB DOI: https://doi.org/10.2210/pdb1NKV/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Escherichia coli
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2003-01-03 Released: 2003-01-28 
• Deposition Author(s): Kuzin, A., Manor, P., Benach, J., Smith, P., Rost, B., Xiao, R., Montelione, G., Hunt, J., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 
  0.290 (Depositor), 0.298 (DCC) 
• R-Value Work: 
  0.220 (Depositor), 0.235 (DCC) 
• R-Value Observed: 
  0.220 (Depositor) 

Literature

X-RAY STRUCTURE OF YJHP FROM E.COLI NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER13

Kuzin, A., Manor, P., Benach, J., Smith, P., Rost, B., Xiao, R., Montelione, G., Hunt, J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 86.35 kDa 
• Atom Count: 5,760 
• Modeled Residue Count: 725 
• Deposited Residue Count: 768 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL PROTEIN yjhP	A, B, C	256	Escherichia coli	Mutation(s): 7
UniProt
Find proteins for P39367 (Escherichia coli (strain K12)) Explore P39367  Go to UniProtKB:  P39367

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free:  0.290 (Depositor), 0.298 (DCC) 
• R-Value Work:  0.220 (Depositor), 0.235 (DCC) 
• R-Value Observed: 0.220 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.968	α = 90
b = 54.418	β = 99.83
c = 118.325	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-01-28 
Deposition Author(s): Kuzin, A., Manor, P., Benach, J., Smith, P., Rost, B., Xiao, R., Montelione, G., Hunt, J., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2003-01-28
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-10-09
  Changes: Data collection, Database references, Derived calculations, Structure summary