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 1NKV | pdb_00001nkv

X-RAY STRUCTURE OF YJHP FROM E.COLI NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER13

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd1nkvc1 Alpha and beta proteins (a/b) S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases Hypothetical Protein YjhP Hypothetical Protein YjhP (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd1nkvc2 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1nkvb1 Alpha and beta proteins (a/b) S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases Hypothetical Protein YjhP Hypothetical Protein YjhP (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1nkvb2 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad1nkva_ Alpha and beta proteins (a/b) S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases Hypothetical Protein YjhP Hypothetical Protein YjhP (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8043851 3000118 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8043851 3000118 SCOP2B (2022-06-29)
ASCOP2 FamilyHypothetical Protein YjhP 8031473 4003079 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8043851 3000118 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CCMAS, Methyltransf_25e1nkvC1 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: CMAS, Methyltransf_25ECOD (v295.2)
BCMAS, Methyltransf_25e1nkvB1 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: CMAS, Methyltransf_25ECOD (v295.2)
AMethyltransf_25e1nkvA1 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Methyltransf_25ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
B3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
A3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF13649Methyltransferase domain (Methyltransf_25)Methyltransferase domainThis family appears to be a methyltransferase domain. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
HYPOTHETICAL PROTEIN yjhP- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR017031Predicted S-adenosyl-L-methionine dependent methyltransferase, YjhP-typeFamily
A, B, C
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A, B, C
IPR041698Methyltransferase domain 25Domain