1JDQ | pdb_00001jdq

Solution Structure of TM006 Protein from Thermotoga maritima


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 85 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 1JDQ

This is version 1.4 of the entry. See complete history

Literature

An NMR approach to structural proteomics.

Yee, A.Chang, X.Pineda-Lucena, A.Wu, B.Semesi, A.Le, B.Ramelot, T.Lee, G.M.Bhattacharyya, S.Gutierrez, P.Denisov, A.Lee, C.H.Cort, J.R.Kozlov, G.Liao, J.Finak, G.Chen, L.Wishart, D.Lee, W.McIntosh, L.P.Gehring, K.Kennedy, M.A.Edwards, A.M.Arrowsmith, C.H.

(2002) Proc Natl Acad Sci U S A 99: 1825-1830

  • DOI: https://doi.org/10.1073/pnas.042684599
  • Primary Citation Related Structures: 
    1JCU, 1JDQ, 1JE3, 1JRM, 1JW2, 1JW3, 1RYJ, 1RYK

  • PubMed Abstract: 

    The influx of genomic sequence information has led to the concept of structural proteomics, the determination of protein structures on a genome-wide scale. Here we describe an approach to structural proteomics of small proteins using NMR spectroscopy. Over 500 small proteins from several organisms were cloned, expressed, purified, and evaluated by NMR. Although there was variability among proteomes, overall 20% of these proteins were found to be readily amenable to NMR structure determination. NMR sample preparation was centralized in one facility, and a distributive approach was used for NMR data collection and analysis. Twelve structures are reported here as part of this approach, which allowed us to infer putative functions for several conserved hypothetical proteins.


  • Organizational Affiliation
    • Ontario Cancer Institute and Department of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, Canada M5G 1L7.

Macromolecule Content 

  • Total Structure Weight: 11.22 kDa 
  • Atom Count: 788 
  • Modeled Residue Count: 98 
  • Deposited Residue Count: 98 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
HYPOTHETICAL PROTEIN TM098398Thermotoga maritimaMutation(s): 0 
UniProt
Find proteins for Q9X078 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9X078 
Go to UniProtKB:  Q9X078
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9X078
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 85 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-02-27
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-23
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection