1RYJ | pdb_00001ryj

Solution NMR Structure of Protein Mth1743 from Methanobacterium thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH1743_1_70; Northeast Structural Genomics Consortium Target TT526.


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 1RYJ

This is version 1.4 of the entry. See complete history

Literature

AN NMR APPROACH TO STRUCTURAL PROTEOMICS

Yee, A.Chang, X.Pineda-Lucena, A.Wu, B.Semesi, A.Le, B.Ramelot, T.Lee, G.M.Bhattacharyya, S.Gutierrez, P.Denisov, A.Lee, C.H.Cort, J.R.Kozlov, G.Liao, J.Finak, G.Chen, L.Wishart, D.Lee, W.McIntosh, L.P.Gehring, K.Kennedy, M.A.Edwards, A.M.Arrowsmith, C.H.

(2002) Proc Natl Acad Sci U S A 99: 1825-1830

  • DOI: https://doi.org/10.1073/pnas.042684599
  • Primary Citation Related Structures: 
    1JCU, 1JDQ, 1JE3, 1JRM, 1JW2, 1JW3, 1RYJ, 1RYK

  • PubMed Abstract: 

    The influx of genomic sequence information has led to the concept of structural proteomics, the determination of protein structures on a genome-wide scale. Here we describe an approach to structural proteomics of small proteins using NMR spectroscopy. Over 500 small proteins from several organisms were cloned, expressed, purified, and evaluated by NMR. Although there was variability among proteomes, overall 20% of these proteins were found to be readily amenable to NMR structure determination. NMR sample preparation was centralized in one facility, and a distributive approach was used for NMR data collection and analysis. Twelve structures are reported here as part of this approach, which allowed us to infer putative functions for several conserved hypothetical proteins.


  • Organizational Affiliation
    • Ontario Cancer Institute and Department of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, Canada M5G 1L7.

Macromolecule Content 

  • Total Structure Weight: 7.77 kDa 
  • Atom Count: 544 
  • Modeled Residue Count: 70 
  • Deposited Residue Count: 70 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
unknown70Methanothermococcus thermolithotrophicusMutation(s): 0 
Gene Names: archaea
UniProt
Find proteins for O27775 (Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H))
Explore O27775 
Go to UniProtKB:  O27775
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO27775
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2004-02-24
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection