1I31 | pdb_00001i31

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR, COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 A RESOLUTION

PDB DOI: https://doi.org/10.2210/pdb1I31/pdb

Classification: ENDOCYTOSIS/EXOCYTOSIS
Organism(s): Rattus norvegicus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2001-02-12 Released: 2001-02-21
Deposition Author(s): Modis, Y., Boll, W., Rapoport, I., Kirchhausen, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.255 (Depositor), 0.228 (DCC)
R-Value Work:
0.247 (Depositor), 0.213 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 1I31

This is version 1.3 of the entry. See complete history.

Literature

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR, COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 A RESOLUTION

Modis, Y., Boll, W., Rapoport, I., Kirchhausen, T.

To be published.

Macromolecule Content

Total Structure Weight: 36.55 kDa
Atom Count: 2,169
Modeled Residue Count: 262
Deposited Residue Count: 320
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CLATHRIN COAT ASSEMBLY PROTEIN AP50	A	314	Rattus norvegicus	Mutation(s): 0 Gene Names: AP50
UniProt
Find proteins for P84092 (Rattus norvegicus) Explore P84092 Go to UniProtKB: P84092
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P84092
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
EPIDERMAL GROWTH FACTOR RECEPTOR	B [auth P]	6	N/A	Mutation(s): 0 EC: 2.7.10.1
UniProt
Find proteins for A8IP97 (Rattus norvegicus) Explore A8IP97 Go to UniProtKB: A8IP97
Entity Groups
UniProt Group	A8IP97
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.255 (Depositor), 0.228 (DCC)
R-Value Work: 0.247 (Depositor), 0.213 (DCC)

Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 125.727	α = 90
b = 125.727	β = 90
c = 74.634	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2001-02-21

Deposition Author(s):

Kirchhausen, T.

Revision History (Full details and data files)

Version 1.0: 2001-02-21
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-08-09
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.