1I31

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR, COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 A RESOLUTION


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BW8PDB ENTRY 1BW8

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.5291SODIUM FORMATE, SODIUM ACETATE, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
4.6673.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 125.727α = 90
b = 125.727β = 90
c = 74.634γ = 120
Symmetry
Space GroupP 64

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4BENT CYLINDRICAL SI-MIRROR (RH COATING)2000-06-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-D1.006APS14-BM-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.52096.40.07725.850.8219192191974.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.522.5676.20.5991.66

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1BW82.5202191920796112396.40.24660.2547RANDOM-0.01087
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.2140.2670.268-1.095
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor21.5
p_staggered_tor19.5
p_scangle_it5.213
p_mcangle_it4.021
p_planar_tor3.7
p_scbond_it3.469
p_mcbond_it2.487
p_multtor_nbd0.267
p_singtor_nbd0.215
p_chiral_restr0.204
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor21.5
p_staggered_tor19.5
p_scangle_it5.213
p_mcangle_it4.021
p_planar_tor3.7
p_scbond_it3.469
p_mcbond_it2.487
p_multtor_nbd0.267
p_singtor_nbd0.215
p_chiral_restr0.204
p_xhyhbond_nbd0.178
p_angle_d0.055
p_planar_d0.05
p_plane_restr0.0251
p_bond_d0.019
p_angle_deg
p_hb_or_metal_coord
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2122
Nucleic Acid Atoms
Solvent Atoms47
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement