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MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR, COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 A RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BW8 PDB ENTRY 1BW8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 291 SODIUM FORMATE, SODIUM ACETATE, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.66 73.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.727 α = 90 b = 125.727 β = 90 c = 74.634 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 BENT CYLINDRICAL SI-MIRROR (RH COATING) 2000-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 1.006 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 96.4 0.077 25.8 50.8 21919 21919 74.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.52 2.56 76.2 0.599 1.6 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BW8 2.5 20 21919 20796 1123 96.4 0.2466 0.213 0.2547 0.2283 RANDOM -0.01087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.214 0.267 0.268 -1.095
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21.5 p_staggered_tor 19.5 p_scangle_it 5.213 p_mcangle_it 4.021 p_planar_tor 3.7 p_scbond_it 3.469 p_mcbond_it 2.487 p_multtor_nbd 0.267 p_singtor_nbd 0.215 p_chiral_restr 0.204
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21.5 p_staggered_tor 19.5 p_scangle_it 5.213 p_mcangle_it 4.021 p_planar_tor 3.7 p_scbond_it 3.469 p_mcbond_it 2.487 p_multtor_nbd 0.267 p_singtor_nbd 0.215 p_chiral_restr 0.204 p_xhyhbond_nbd 0.178 p_angle_d 0.055 p_planar_d 0.05 p_plane_restr 0.0251 p_bond_d 0.019 p_angle_deg p_hb_or_metal_coord p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2122 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement