1AA5

VANCOMYCIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.89 Å
  • R-Value Observed: 0.124 

wwPDB Validation   3D Report Full Report


This is version 3.0 of the entry. See complete history


Literature

Simultaneous Recognition of a Carboxylate-Containing Ligand and an Intramolecular Surrogate Ligand in the Crystal Structure of an Asymmetric Vancomycin Dimer.

Loll, P.J.Bevivino, A.E.Korty, B.D.Axelsen, P.H.

(1997) J Am Chem Soc 119: 1516


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VANCOMYCIN
A, B
7Amycolatopsis orientalisMutation(s): 0 
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
vancosamine-(1-2)-beta-D-glucopyranose
C, D
2N/A
Glycosylation Resources
GlyTouCan:  G14263HU
GlyCosmos:  G14263HU
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.89 Å
  • R-Value Observed: 0.124 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 28.45α = 90
b = 28.45β = 90
c = 65.84γ = 90
Software Package:
Software NamePurpose
SHELXL-93model building
SHELXL-93refinement
MADNESdata reduction
PROCORdata reduction
XSCALEdata scaling
SHELXL-93phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-08-20
    Type: Initial release
  • Version 1.1: 2011-06-14
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-07-27
    Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary
  • Version 1.4: 2012-12-12
    Changes: Other
  • Version 1.5: 2016-10-19
    Changes: Other
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Polymer sequence, Structure summary
  • Version 3.0: 2023-11-15
    Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary