Simultaneous Recognition of a Carboxylate-Containing Ligand and an Intramolecular Surrogate Ligand in the Crystal Structure of an Asymmetric Vancomycin Dimer.
Loll, P.J., Bevivino, A.E., Korty, B.D., Axelsen, P.H.(1997) J Am Chem Soc 119: 1516
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
(1997) J Am Chem Soc 119: 1516
Find similar proteins by: Sequence | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
VANCOMYCIN | 7 | Amycolatopsis orientalis | Mutation(s): 0 | ||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ACY Query on ACY | E [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N | |||
CL Query on CL | F [auth A], G [auth A], H [auth B], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
OMY Query on OMY | A, B | L-PEPTIDE LINKING | C9 H10 Cl N O4 | TYR |
Entity ID: 1 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000204 Query on PRD_000204 | A, B | Vancomycin | Glycopeptide / Antibiotic |
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000204 Query on PRD_000204 | C, D | Vancomycin | Glycopeptide / Antibiotic |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 28.45 | α = 90 |
b = 28.45 | β = 90 |
c = 65.84 | γ = 90 |
Software Name | Purpose |
---|---|
SHELXL-93 | model building |
SHELXL-93 | refinement |
MADNES | data reduction |
PROCOR | data reduction |
XSCALE | data scaling |
SHELXL-93 | phasing |