1ZIB

REDUCED PSEUDOAZURIN

PDB DOI: https://doi.org/10.2210/pdb1ZIB/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Achromobacter cycloclastes
Mutation(s): No

Deposited: 1996-04-09 Released: 1997-04-01
Deposition Author(s): Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Work: 0.169

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystallization and preliminary X-ray studies on pseudoazurin from Achromobacter cycloclastes IAM1013.

Inoue, T., Nishio, N., Kai, Y., Harada, S., Ohshiro, Y., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H.

(1993) J Biochem 114: 761-762

PubMed: 8138527 Search on PubMed
DOI: https://doi.org/10.1093/oxfordjournals.jbchem.a124251
Primary Citation of Related Structures:
1ZIA, 1ZIB

PubMed Abstract:
New crystals of a blue copper protein, pseudoazurin from denitrifier Achromobacter cycloclastes IAM1013, have been obtained by means of vapor diffusion with ammonium sulfate as a precipitant at pH 6.0 and 4 degrees C. The crystals belong to the orthorhombic system, space group P2(1)2(1)2(1), with unit cell dimensions of a = 56.69(2), b = 61.53(2), and c = 30.20(1) A. The asymmetric unit includes one molecule of pseudoazurin with a Vm value of 2.04 A3/Da. The crystals are so stable against X-ray irradiation that a complete data set up to 1.54 A has been collected using a single native crystal. Solution of the structure was performed by means of the Patterson search techniques, and the current crystallographic R-factor is 17.5% at 3.0 A resolution. Refinement at higher resolution is in progress.

Organizational Affiliation

Department of Applied Chemistry, Faculty of Engineering, Osaka University.

Macromolecule Content

Total Structure Weight: 13.1 kDa
Atom Count: 1,006
Modelled Residue Count: 124
Deposited Residue Count: 124
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PSEUDOAZURIN	A	124	Achromobacter cycloclastes	Mutation(s): 0
UniProt
Find proteins for P19567 (Achromobacter cycloclastes) Explore P19567 Go to UniProtKB: P19567
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P19567
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CU Query on CU Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Work: 0.169
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.65	α = 90
b = 61.67	β = 90
c = 30.42	γ = 90

Software Package:

Software Name	Purpose
PROLSQ	refinement
PROCESS	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 1997-04-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 1997-04-01
Type: Initial release
Version 1.1: 2008-03-24
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations, Other