1ZEE | pdb_00001zee

X-Ray Crystal Structure of Protein SO4414 from Shewanella oneidensis. Northeast Structural Genomics Consortium Target SoR52.

PDB DOI: https://doi.org/10.2210/pdb1ZEE/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Shewanella oneidensis MR-1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2005-04-18 Released: 2005-05-03
Deposition Author(s): Forouhar, F., Abashidze, M., Vorobiev, S.M., Conover, K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free:
0.275 (Depositor), 0.291 (DCC)
R-Value Work:
0.234 (Depositor), 0.252 (DCC)
R-Value Observed:
0.234 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1ZEE

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of the Hypothetical Protein SO4414 from Shewanella oneidensis, NESG Target SoR52

Forouhar, F., Abashidze, M., Vorobiev, S.M., Conover, K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 93.49 kDa
Atom Count: 6,215
Modeled Residue Count: 726
Deposited Residue Count: 806
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein SO4414	A, B	403	Shewanella oneidensis MR-1	Mutation(s): 9 Gene Names: GeneID:1172013 EC: 1.13.11.11
UniProt
Find proteins for Q8E972 (Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)) Explore Q8E972 Go to UniProtKB: Q8E972
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8E972
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free: 0.275 (Depositor), 0.291 (DCC)
R-Value Work: 0.234 (Depositor), 0.252 (DCC)
R-Value Observed: 0.234 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 138.082	α = 90
b = 68.024	β = 90
c = 90.954	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2005-05-03

Deposition Author(s):

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2005-05-03
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.