1ZD8 | pdb_00001zd8

Structure of human adenylate kinase 3 like 1

• PDB DOI: https://doi.org/10.2210/pdb1ZD8/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2005-04-14 Released: 2005-05-17 
• Deposition Author(s): Choe, J., Atanassova, A., Arrowsmith, C., Edwards, A., Sundstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.48 Å
• R-Value Free: 
  0.240 (Depositor), 0.236 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.221 (DCC) 
• R-Value Observed: 
  0.225 (Depositor) 

Starting Model: experimental

Literature

Structure of human adenylate kinase 3 like 1

Atanassova, A., Choe, J., Arrowsmith, C., Edwards, A., Sundstrom, M., Bochkarev, A., Park, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 25.6 kDa 
• Atom Count: 1,922 
• Modeled Residue Count: 212 
• Deposited Residue Count: 227 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GTP:AMP phosphotransferase mitochondrial	A	227	Homo sapiens	Mutation(s): 0  Gene Names: AK3L1, AKL3L EC: 2.7.4.10
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UIJ7 (Homo sapiens) Explore Q9UIJ7  Go to UniProtKB:  Q9UIJ7
PHAROS:  Q9UIJ7 GTEx:  ENSG00000147853

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.48 Å
• R-Value Free:  0.240 (Depositor), 0.236 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.221 (DCC) 
• R-Value Observed: 0.225 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.128	α = 90
b = 61.873	β = 108.14
c = 50.192	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-05-17 
Deposition Author(s): Choe, J., Atanassova, A., Arrowsmith, C., Edwards, A., Sundstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2005-05-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-08-23
  Changes: Data collection, Database references, Refinement description