1ZBJ | pdb_00001zbj

Inferential Structure Determination of the Fyn SH3 domain using NOESY data from a 15N,H2 enriched protein

• PDB DOI: https://doi.org/10.2210/pdb1ZBJ/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2005-04-08 Released: 2005-05-03 
• Deposition Author(s): Rieping, W., Habeck, M., Nilges, M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 10000 
• Conformers Submitted: 20 
• Selection Criteria: High posterior probability structures 

Literature

Inferential Structure Determination

Rieping, W., Habeck, M., Nilges, M.

(2005) Science 309: 303-306

• PubMed: 16002620 
• DOI: https://doi.org/10.1126/science.1110428
• Primary Citation Related Structures: 
  1ZBJ


• PubMed Abstract: 
  

  Macromolecular structures calculated from nuclear magnetic resonance data are not fully determined by experimental data but depend on subjective choices in data treatment and parameter settings. This makes it difficult to objectively judge the precision of the structures. We used Bayesian inference to derive a probability distribution that represents the unknown structure and its precision. This probability distribution also determines additional unknowns, such as theory parameters, that previously had to be chosen empirically. We implemented this approach by using Markov chain Monte Carlo techniques. Our method provides an objective figure of merit and improves structural quality.

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Organizational Affiliation: 
• Unité de Bioinformatique Structurale, Institut Pasteur, CNRS URA 2185, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 6.74 kDa 
• Atom Count: 477 
• Modeled Residue Count: 59 
• Deposited Residue Count: 59 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Proto-oncogene tyrosine-protein kinase FYN	A	59	Homo sapiens	Mutation(s): 0  Gene Names: FYN EC: 2.7.1.112 (PDB Primary Data), 2.7.10.2 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P06241 (Homo sapiens) Explore P06241  Go to UniProtKB:  P06241
PHAROS:  P06241 GTEx:  ENSG00000010810

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 10000 
• Conformers Submitted: 20 
• Selection Criteria: High posterior probability structures 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-05-03 
Deposition Author(s): Rieping, W., Habeck, M., Nilges, M.

Revision History  

• Version 1.0: 2005-05-03
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Database references, Derived calculations
• Version 1.4: 2024-05-22
  Changes: Data collection