1Z4R | pdb_00001z4r

Human GCN5 Acetyltransferase

PDB DOI: https://doi.org/10.2210/pdb1Z4R/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2005-03-16 Released: 2005-03-29
Deposition Author(s): Dong, A., Bernstein, G., Schuetz, A., Antoshenko, T., Wu, H., Loppnau, P., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Plotnikov, A., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.74 Å
R-Value Free:
0.240 (Depositor), 0.241 (DCC)
R-Value Work:
0.197 (Depositor), 0.196 (DCC)
R-Value Observed:
0.197 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a binary complex between human GCN5 histone acetyltransferase domain and acetyl coenzyme A

Schuetz, A., Bernstein, G., Dong, A., Antoshenko, T., Wu, H., Loppnau, P., Bochkarev, A., Plotnikov, A.N.

(2007) Proteins 68: 403-407

PubMed: 17410582 Search on PubMed
DOI: https://doi.org/10.1002/prot.21407
Primary Citation Related Structures:
1Z4R

Organizational Affiliation

Structural Genomics Consortium, University of Toronto, Toronto, Ontario, Canada M5G 1L5.

Macromolecule Content

Total Structure Weight: 20.22 kDa
Atom Count: 1,512
Modeled Residue Count: 163
Deposited Residue Count: 168
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
General control of amino acid synthesis protein 5-like 2	A	168	Homo sapiens	Mutation(s): 0 Gene Names: GCN5 EC: 2.3.1.48 (PDB Primary Data), 2.3.1 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q92830 (Homo sapiens) Explore Q92830 Go to UniProtKB: Q92830
PHAROS: Q92830 GTEx: ENSG00000108773
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92830
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO Query on ACO Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.74 Å
R-Value Free: 0.240 (Depositor), 0.241 (DCC)
R-Value Work: 0.197 (Depositor), 0.196 (DCC)
R-Value Observed: 0.197 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.09	α = 90
b = 38.09	β = 90
c = 186.34	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
CrystalClear	data reduction
d*TREK	data scaling
PHASER	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2005-03-29

Deposition Author(s):

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2005-03-29
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-08-23
Changes: Data collection, Database references, Derived calculations, Refinement description