1YOY | pdb_00001yoy

Predicted coding region AF1432 from Archaeoglobus Fulgidus

PDB DOI: https://doi.org/10.2210/pdb1YOY/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Archaeoglobus fulgidus DSM 4304
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2005-01-28 Released: 2005-02-08
Deposition Author(s): Midwest Center for Structural Genomics (MCSG), Lunin, V.V., Savchenko, A., Joachimiak, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.236 (Depositor), 0.236 (DCC)
R-Value Work:
0.184 (Depositor), 0.184 (DCC)
R-Value Observed:
0.186 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1YOY

This is version 1.4 of the entry. See complete history.

Literature

The crystal structure of predicted coding region AF1432 from Archaeoglobus Fulgidus

Lunin, V.V., Evdokimova, E., Kudritskaya, M., Joachimiak, A., Edwards, A., Savchenko, A.

To be published.

Macromolecule Content

Total Structure Weight: 20.02 kDa
Atom Count: 1,251
Modeled Residue Count: 146
Deposited Residue Count: 175
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein AF1432	A	175	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0 EC: 3.1.3.89
UniProt
Find proteins for O28840 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28840 Go to UniProtKB: O28840
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O28840
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.236 (Depositor), 0.236 (DCC)
R-Value Work: 0.184 (Depositor), 0.184 (DCC)
R-Value Observed: 0.186 (Depositor)

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 131.799	α = 90
b = 131.799	β = 90
c = 58.178	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SnB	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2005-02-08

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2005-02-08
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2024-02-14
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.