1YJ0 | pdb_00001yj0

Crystal Structures of Chicken Annexin V in Complex with Zn2+

• PDB DOI: https://doi.org/10.2210/pdb1YJ0/pdb

• Classification: PROTEIN AND METAL BINDING PROTEIN
• Organism(s): Gallus gallus
• Mutation(s): No 


• Deposited: 2005-01-11 Released: 2005-03-08 
• Deposition Author(s): Ortlund, E.A., Chai, G., Genge, B., Wu, L.N.Y., Wuthier, R.E., Lebioda, L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.95 Å
• R-Value Free: 
  0.286 (Depositor) 
• R-Value Work: 
  0.211 (Depositor) 
• R-Value Observed: 
  0.211 (Depositor) 

Literature

Crystal Structures of Chicken Annexin A5 in Complex with Functional Modifiers Ca2+ and Zn2+ Reveal Zn2+ Induced Formation of Non-Planar Assemblies

Ortlund, E.A., Chai, G., Genge, B., Wu, L.N.Y., Wuthier, R.E., Lebioda, L.

(2005) Annexins 1: 183-190

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 37.02 kDa 
• Atom Count: 2,616 
• Modeled Residue Count: 317 
• Deposited Residue Count: 320 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Annexin A5	A	320	Gallus gallus	Mutation(s): 0
UniProt
Find proteins for P17153 (Gallus gallus) Explore P17153  Go to UniProtKB:  P17153

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
ZN	J [auth A], K [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.95 Å
• R-Value Free:  0.286 (Depositor) 
• R-Value Work:  0.211 (Depositor) 
• R-Value Observed: 0.211 (Depositor) 

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.593	α = 90
b = 106.593	β = 90
c = 106.593	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
CNS	refinement
HKL-2000	data reduction
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-03-08 
Deposition Author(s): Ortlund, E.A., Chai, G., Genge, B., Wu, L.N.Y., Wuthier, R.E., Lebioda, L.

Revision History  

• Version 1.0: 2005-03-08
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2011-11-16
  Changes: Atomic model
• Version 1.4: 2024-02-14
  Changes: Data collection, Database references, Derived calculations