1YE3 | pdb_00001ye3

HORSE LIVER ALCOHOL DEHYDROGENASE APOENZYME

• PDB DOI: https://doi.org/10.2210/pdb1YE3/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Equus caballus
• Mutation(s): No 


• Deposited: 2004-12-27 Released: 2005-01-11 
• Deposition Author(s): Plapp, B.V., Savarimuthu, B.R., Ramaswamy, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.59 Å
• R-Value Free: 
  0.256 (Depositor), 0.219 (DCC) 
• R-Value Work: 
  0.199 (Depositor), 0.207 (DCC) 
• R-Value Observed: 
  0.201 (Depositor) 

Starting Model: experimental

Literature

Horse Liver Alcohol Dehydrogenase Apoenzyme

Plapp, B.V., Savarimuthu, B.R., Ramaswamy, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 40.1 kDa 
• Atom Count: 2,995 
• Modeled Residue Count: 374 
• Deposited Residue Count: 374 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase E chain	A	374	Equus caballus	Mutation(s): 0  EC: 1.1.1.1
UniProt
Find proteins for P00327 (Equus caballus) Explore P00327  Go to UniProtKB:  P00327

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MPD	D [auth A]	(4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.59 Å
• R-Value Free:  0.256 (Depositor), 0.219 (DCC) 
• R-Value Work:  0.199 (Depositor), 0.207 (DCC) 
• R-Value Observed: 0.201 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.78	α = 90
b = 74.29	β = 90
c = 181.25	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-01-11 
Deposition Author(s): Plapp, B.V., Savarimuthu, B.R., Ramaswamy, S.

Revision History  

• Version 1.0: 2005-01-11
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2023-08-23
  Changes: Data collection, Database references, Derived calculations, Refinement description