1Y0O | pdb_00001y0o

crystal structure of reduced AtFKBP13

• PDB DOI: https://doi.org/10.2210/pdb1Y0O/pdb

• Classification: ISOMERASE
• Organism(s): Arabidopsis thaliana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-11-15 Released: 2005-11-01 
• Deposition Author(s): Gayathri, G., Swaminathan, K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free: 
  0.235 (Depositor) 
• R-Value Work: 
  0.203 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of reduced AtFKBP13

Gopalan, G., Swaminthan, K., Luan, S., Battaile, K.P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PQS (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PQS (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors and generated by PQS (software)

Biological Assembly 5  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 5 assigned by authors and generated by PQS (software)

Biological Assembly 6  

Global Symmetry: Dihedral - D5  (Explore in 3D)
Global Stoichiometry: Homo 10-mer - A10 

Biological assembly 6 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 68.04 kDa 
• Atom Count: 4,943 
• Modeled Residue Count: 625 
• Deposited Residue Count: 645 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FKBP-type peptidyl-prolyl cis-trans isomerase 3	A, B, C, D, E	129	Arabidopsis thaliana	Mutation(s): 0  Gene Names: AtFKBP13 EC: 5.2.1.8
UniProt
Find proteins for Q9SCY2 (Arabidopsis thaliana) Explore Q9SCY2  Go to UniProtKB:  Q9SCY2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free:  0.235 (Depositor) 
• R-Value Work:  0.203 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.898	α = 90
b = 125.753	β = 90
c = 119.424	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
CCP4	model building
CNS	refinement
CCP4	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-01 
Deposition Author(s): Gayathri, G., Swaminathan, K.

Revision History  

• Version 1.0: 2005-11-01
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Refinement description
• Version 1.4: 2024-11-13
  Changes: Structure summary